powderymildew: Demographic and genetic real data

In StrainRanking: Ranking of Pathogen Strains

Description

Demographic and genetic data collected during an epidemic of powdery mildew of Plantago lanceolata.

Usage

data(powderymildew)

Format

The format is: List of 4 components

$demographic.coord 'data.frame': 216 obs. of 2 variables (coordinates of the 216 sites with demographic data).

$genetic.coord 'data.frame': 22 obs. of 2 variables (coordinates of the 22 sites with genetic data).

$demographic.measures num [1:216, 1:2] Pathogen demographic measurements at week 32 and week 34 for sites whose coordinates are given in $demographic.coord.

$genetic.frequencies num [1:22, 1:5] Frequencies of strains 1 to 5 for sites whose coordinates are given in $genetic.coord.

See the examples section to visualize the data set.

References

Soubeyrand S., Tollenaere C., Haon-Lasportes E. & Laine A.-L. (2014). Regression-based ranking of pathogen strains with respect to their contributions to natural epidemics. PLOS ONE 9(1): e86591.

See Also

DGobj-class, DGobj.rawdata

Examples

## load the powderymildew data set
data(powderymildew)

## names of items of powderymildew
names(powderymildew)

## print powderymildew
print(powderymildew)

## alternatives to print one of the items of powderymildew, e.g. the 4th items:
print(powderymildew$genetic.frequencies)
print(powderymildew[[4]])

StrainRanking documentation built on May 2, 2019, 3:38 p.m.