e2e_plot_catch: Plot the distribution and composition of annual catches...
In StrathE2E2: End-to-End Marine Food Web Model

Description Usage Arguments Details Value See Also Examples

Create stacked barplots of the distribution of offshore and inshore landings and discards across gears by guild, or across guilds by gears, in the final year of a model run.

1	e2e_plot_catch(model, results, selection = "BY_GEAR")

`model`	R-list object defining the baseline model configuration used to generate the data and compiled by the e2e_read() function.
`results`	List object of single-run model output generated by running the function e2e_run() function.
`selection`	Text string from a list identifying the group of model output variables to be plotted. Select from: "BY_GUILD", "BY_GEAR". With the former, each panel represents a different guild; with the latter, each panel represnts a different gear. Remember to include the phrase within "" quotes.

Data in zonal landings and discards by guild and gear in the final year of a model run are generated as a standard output from the model, and saved both as csv files and in the results object returned by the e2e_run() function. This function organises these data in two different ways to display as barplots.

The first display is a multi-panel plot in which each panel represents a different guild, and the bars show the zonal landings by each gear. The alternative display has each panel as a different gear, and the bars show the landings and discards of each guild.

The unit of the displayed data are mMN/y from the model domain as a whole, which is taken as being 1m2.

graphical display in a new graphics window.

e2e_read, e2e_run, e2e_run_mc, e2e_plot_migration, e2e_plot_eco, e2e_plot_trophic, e2e_plot_biomass

# Load the 1970-1999 version of the North Sea model supplied with the package, run, and
# generate a plot:
    model <- e2e_read("North_Sea", "1970-1999")
    results <- e2e_run(model, nyears=2,csv.output=FALSE)
    e2e_plot_catch(model, results, selection="BY_GEAR")
    dev.new()
    e2e_plot_catch(model, results, selection="BY_GUILD")