StructFDR: False Discovery Control Procedure Integrating the Prior Structure Information

Perform more powerful false discovery control (FDR) for microbiome data, taking into account the prior phylogenetic relationship among bacteria species. As a general methodology, it is applicable to any type of (genomic) data with prior structure information.

Author
Jun Chen
Date of publication
2016-11-01 17:09:24
Maintainer
Jun Chen <chen.jun2@mayo.edu>
License
GPL-2
Version
1.0

View on CRAN

Man pages

AdjStats
Prior Structure-Adjusted Statistic
coef.corHerit
Coefficients of a corHerit Object
corHerit
Correlation Structure Constructor
corMatrix.corHerit
Matrix of a corHerit Object
EstHyper
Estimate the Hyper-parameter Using Generalized Least Squares
Initialize.corHerit
Initialize corHerit Object
StructFDR
False Discovery Rate (FDR) Control Integrating a General...
StructFDR-package
False Discovery Rate (FDR) Control Procedure Integrating the...
TreeFDR
False Discovery Rate (FDR) Control Integrating Prior Tree...
Ztransform
Transform P-values to Z-values

Files in this package

StructFDR
StructFDR/NAMESPACE
StructFDR/R
StructFDR/R/StructFDR.R
StructFDR/MD5
StructFDR/DESCRIPTION
StructFDR/man
StructFDR/man/AdjStats.Rd
StructFDR/man/StructFDR-package.Rd
StructFDR/man/coef.corHerit.Rd
StructFDR/man/StructFDR.Rd
StructFDR/man/TreeFDR.Rd
StructFDR/man/corHerit.Rd
StructFDR/man/Initialize.corHerit.Rd
StructFDR/man/Ztransform.Rd
StructFDR/man/corMatrix.corHerit.Rd
StructFDR/man/EstHyper.Rd