alcohol: Alcohol data set

In StructFDR: False Discovery Control Procedure Integrating the Prior Structure Information

Description

The data set was taken from a study of the dietary association with the gut microbiome (Wu, 2011). Here we include the alcohol intake as the primary phenotype. The OTU abundance data consists of 98 samples with 949 OTUs with prevalence > 10%. The raw counts are normalized to account for variable library sizes.

Usage

data(alcohol)

Format

The format is: chr "alcohol"

Details

A list containing the normalized OTU data (X, counts divided by GMPR size factors), the taxonomic lineages of the OTUs (otu.name), the alcohol intake phenotype (High and Low) (Y), the tree (tree).

Source

Wu, Gary D., et al. "Linking long-term dietary patterns with gut microbial enterotypes." Science 334.6052 (2011): 105-108.

Examples

data(alcohol)

Example output

Loading required package: nlme
Loading required package: ape
Loading required package: cluster
Loading required package: dirmult
Loading required package: matrixStats

StructFDR documentation built on May 2, 2019, 9:44 a.m.