bathymetry: Bathymetry data for the Eastern Bering Sea

In TrackReconstruction: Reconstruct Animal Tracks from Magnetometer, Accelerometer, Depth and Optional Speed Data

Description

Bathymetry data for the Eastern Bering Sea at a resolution of 30 arc seconds downloaded from http://www.gebco.net

Usage

data(bathymetry)

Format

A data frame with 1814400 observations on the following 3 variables.

Long

a numeric vector

Lat

a numeric vector

Depth

a numeric vector

Details

If you want to do color graphing of the tracks within R I have provided a Mapper function to do this but it requires gridded (raster) bathymetric data to create the background map. The source for this example data set comes from the General Bathymetric Chart of the Oceans or GEBCO at https://www.gebco.net.

Examples

data(bathymetry)
str(bathymetry)
head(bathymetry);tail(bathymetry)
bathymetryBogs<-subset(bathymetry,Long<=(-166) & Long >=(-169)
	& Lat<= 54.5 & Lat >=53,select=Long:Depth)

image.xyz=tapply(bathymetryBogs$Depth, list(bathymetryBogs$Long, bathymetryBogs$Lat), unique)
#create palette for depth colors
Bathymetry.palette<-colorRampPalette(brewer.pal(9, "Blues"),bias=3)
#Plot the background map image
image.plot(image.xyz,
	col=c(rev(Bathymetry.palette(200)),terrain.colors(100)),#gray(0:20/20),
	breaks=round(c(seq(from=min(image.xyz),to=0,length.out=201),seq(from=max(image.xyz)/101
	,to=max(image.xyz),length.out=100)))
	#,smallplot=2 #plots legend off x axis
	)
## Not run: 
#If you want to map the entire bathymetry file, it takes a while
image.xyz=tapply(bathymetry$Depth, list(bathymetry$Long, bathymetry$Lat), unique)
#create palette for depth colors
Bathymetry.palette<-colorRampPalette(brewer.pal(9, "Blues"),bias=3)
#Plot the background map image
image.plot(image.xyz,
	col=c(rev(Bathymetry.palette(200)),terrain.colors(100)),#gray(0:20/20),
	breaks=round(c(seq(from=min(image.xyz),to=0,length.out=201),seq(from=max(image.xyz)/101
	,to=max(image.xyz),length.out=100)))
	#,smallplot=2 #plots legend off x axis
	)

## End(Not run)

TrackReconstruction documentation built on Dec. 11, 2021, 10:07 a.m.