Analyze Peptide Array Data and characterize peptide sequence space. Allows for high level visualization of global signal, Quality control based on replicate correlation and/or relative Kd, calculation of peptide Length/Charge/Kd parameters, Hits selection based on RFU Signal, and amino acid composition/basic motif recognition with RFU signal weighting. Basic signal trends can be used to generate peptides that follow the observed compositional trends.
|Date of publication||2016-05-22 22:54:19|
|Maintainer||Cody Moore <Jumper9400@gmail.com>|
aaDist: Position Independent Amino Acid Distributions
aaStruct: Positional Amino Acid Composition Calculations
Attrib: Calculate Peptide Length and Charge Attributes
Dups: Average duplicated peptides from a VDAP dataset
genPep: Peptide generator based on the output of functions 'vComp' or...
hitSel: Signal Based Hits Selection for VDAP
KdA: Peptide Dissociation Rate Constant (Kd) Calculations
lcScan: Signal or Kd Distributions separated by Length/Charge...
QCKd: Quality Control of Peptides Based on Reproducibility and Kd
QCon: Subsetting for VDAP function QCKd
resSep: Select Peptides with the Specified Amino Acid Residue(s) at...
vComp: Amino Acid Disbutions by Position at Various Length/Charge
vFormat: Length/Charge/Kd Peptide Calculations and File Assembly
vMotif: Generate Signal Weighted Amino Acid Heat Maps by Position
vSep: Select Peptides of a Particular Length/Charge Combination