Description Usage Arguments Details Value Author(s) See Also Examples
Allows the experimenter to subset peptide data based on a selected amino acid residue or sequence a specified position(s). Requires the experimenter to select the residue(s) and position(s) of interest at a given length or length/charge combination.
1 |
File |
An object, generally a |
Length |
An |
Charge |
An |
Pos |
An |
Res |
A |
The lengths of the arguments Pos
and Res
must match.
Sequence Positions are read from right to left.
Ex: The residue "R" in 5-mer sequence "RSGSG" is at position 5.
When typing in a sequence of interest, it will be in reverse with regard to the displayed sequence.
Ex: Sequence "SR" at positions 4:5 in the 5-mer"RSGSG"
A data.frame
of the same format as the argument File
containing only peptides
that contain the specified residue(s) at the indicated position(s).
Cody Moore
1 2 3 4 5 6 7 8 9 10 11 12 13 | ## Example data.frame ##
protEx.resSep <- data.frame(Peptides = c("PWRGPWARVGSG","GYNRVGQGSG","PNGYRSGVKGSG","GSG"),
Length = c(12,10,12,3),Charge = c(2,1,2,0),Kd = c(0.2572361,2.8239730,3.3911868,281.3058),
C_6uM = c(65011.48,47462.24,24778,2613.03),C_6uM2 = c(62637.81,20723.85,21313.67,2300.216))
## Single Residue Separation ##
resSepEx1 <- resSep(protEx.resSep,12,2,5,"R")
## Positional Sequence Separation ##
resSepEx2 <- resSep(protEx.resSep,12,2,5:6,c("RA"))
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.