Nothing
## ----global_options, include=FALSE--------------------------------------------
library(ggplot2)
library(gridExtra)
library(itsadug)
knitr::opts_chunk$set(fig.width=6, fig.height=4, fig.align="center", warning=FALSE)
## ---- eval = TRUE, echo=FALSE, results='hide', message=FALSE------------------
library(VWPre)
# data(VWdat)
# dat <- fasttrack(data = VWdat, Subject = "RECORDING_SESSION_LABEL", Item = "itemid",
# EventColumns = c("Subject", "TRIAL_INDEX"), NoIA = 4, Adjust = 100, Recording = "LandR",
# WhenLandR = "Right", BinSize = 50, SamplingRate = 1000,
# ObsPerBin = 50, Constant = 0.5, Output = "ELogit")
# save(dat, file = "plotdat.rda", compress = "xz")
load("plotdat.rda")
## ---- eval= TRUE, fig.show='hold', results='asis', message=FALSE--------------
plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target", IA_2_P = "Rhyme", IA_3_P = "OnsetComp",
IA_4_P = "Distractor"),
Condition1 = NULL, Condition2 = NULL, Cond1Labels = NA, Cond2Labels = NA,
ErrorBar = TRUE, VWPreTheme = TRUE)
## ---- eval= TRUE, fig.show='hold', results='asis', message=FALSE--------------
plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target", IA_2_P = "Rhyme", IA_3_P = "OnsetComp",
IA_4_P = "Distractor"),
Condition1 = NULL, Condition2 = NULL, Cond1Labels = NA, Cond2Labels = NA,
ErrorBar = TRUE, VWPreTheme = TRUE) + ggtitle("Averaged Data")
## ---- eval= TRUE, fig.show='hold', results='asis', message=FALSE--------------
plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target", IA_2_P = "Rhyme", IA_3_P = "OnsetComp",
IA_4_P = "Distractor"),
Condition1 = NULL, Condition2 = NULL, Cond1Labels = NA, Cond2Labels = NA,
ErrorBar = TRUE, VWPreTheme = FALSE) + theme(axis.text = element_text(size = 15))
## ---- eval= TRUE, fig.show='hold', fig.height=5, results='asis', message=FALSE----
plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target", IA_2_P = "Rhyme", IA_3_P = "OnsetComp",
IA_4_P = "Distractor"), Condition1 = "talker",
Condition2 = NULL, Cond1Labels = c(CH1 = "Chinese 1", CH10 = "Chinese 3",
CH9 = "Chinese 2", EN3 = "English 1"),
Cond2Labels = NA, ErrorBar = TRUE, VWPreTheme = TRUE)
## ---- eval= TRUE, fig.show='hold', fig.width=7, fig.height=3.5, results='asis', message=FALSE----
plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target", IA_2_P = "Rhyme", IA_3_P = "OnsetComp",
IA_4_P = "Distractor"), Condition1 = NULL,
Condition2 = "talker", Cond1Labels = NA, Cond2Labels = c(CH1 = "Chinese 1",
CH10 = "Chinese 3",
CH9 = "Chinese 2",
EN3 = "English 1"),
ErrorBar = TRUE, VWPreTheme = TRUE)
## ---- eval= TRUE, fig.show='hold', fig.width=7, fig.height=5, results='asis', message=FALSE----
plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target", IA_2_P = "Rhyme", IA_3_P = "OnsetComp",
IA_4_P = "Distractor"), Condition1 = "talker",
Condition2 = "Exp", Cond1Labels = c(CH1 = "Chinese 1", CH10 = "Chinese 3",
CH9 = "Chinese 2", EN3 = "English 1"),
Cond2Labels = c(High = "High Exp", Low = "Low Exp"), ErrorBar = TRUE,
VWPreTheme = TRUE)
## ---- eval= TRUE, fig.show='hold', fig.width=7, fig.height=8, results='asis', message=FALSE----
gridExtra::grid.arrange(
plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target", IA_2_P = "Rhyme", IA_3_P = "OnsetComp",
IA_4_P = "Distractor"),
Condition1 = NULL, Condition2 = NULL, Cond1Labels = NA, Cond2Labels = NA,
ErrorBar = TRUE, VWPreTheme = TRUE),
plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target", IA_2_P = "Rhyme", IA_3_P = "OnsetComp",
IA_4_P = "Distractor"),
Condition1 = NULL, Condition2 = NULL, Cond1Labels = NA, Cond2Labels = NA,
ErrorBar = FALSE, ErrorBand = TRUE, VWPreTheme = TRUE),
nrow=2, ncol=1)
## ---- eval= TRUE, fig.show='hold', fig.width=7, fig.height=8, results='asis', message=TRUE----
gridExtra::grid.arrange(
plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target", IA_2_P = "Rhyme", IA_3_P = "OnsetComp",
IA_4_P = "Distractor"),
Condition1 = NULL, Condition2 = NULL, Cond1Labels = NA, Cond2Labels = NA,
ErrorBar = FALSE, ErrorBand = TRUE, ErrorType = "CI", ConfLev = 95,
CItype = "pointwise", VWPreTheme = TRUE),
plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target", IA_2_P = "Rhyme", IA_3_P = "OnsetComp",
IA_4_P = "Distractor"),
Condition1 = NULL, Condition2 = NULL, Cond1Labels = NA, Cond2Labels = NA,
ErrorBar = FALSE, ErrorBand = TRUE, ErrorType = "CI", ConfLev = 95,
CItype = "simultaneous", VWPreTheme = TRUE),
nrow=2, ncol=1)
## ---- eval= TRUE, fig.show='hold', fig.height=5, results='asis', message=FALSE----
plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target"), Condition1 = "talker",
Condition2 = NULL, Cond1Labels = c(CH1 = "Chinese 1", CH10 = "Chinese 3",
CH9 = "Chinese 2", EN3 = "English 1"),
Cond2Labels = NA, ErrorBar = TRUE, VWPreTheme = TRUE)
## ---- eval= TRUE, fig.show='hold', results='asis', message=FALSE--------------
plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target", IA_2_P = "Rhyme", IA_3_P = "OnsetComp",
IA_4_P = "Distractor"),
Condition1 = NULL, Condition2 = NULL, Cond1Labels = NA, Cond2Labels = NA,
Averaging = "Subject", ErrorBar = TRUE, ErrorType = "SE", VWPreTheme = TRUE)
## ---- eval= TRUE, fig.show='hold', fig.width=7, fig.height=8, results='asis', message=FALSE----
gridExtra::grid.arrange(
plot_avg_diff(data = dat, type = "proportion", xlim = c(0, 1000),
DiffCols = c(IA_1_P = "Target", IA_2_P = "Rhyme"),
Condition1 = NULL, Condition2 = NULL, Cond1Labels = NA,
Cond2Labels = NA, ErrorBar = TRUE, VWPreTheme = TRUE),
plot_avg_diff(data = dat, type = "proportion", xlim = c(0, 1000),
DiffCols = c(IA_1_P = "Target", IA_2_P = "Rhyme"),
Condition1 = "talker", Condition2 = NULL, Cond1Labels = c(CH1 = "Chinese 1",
CH10 = "Chinese 3", CH9 = "Chinese 2", EN3 = "English 1"),
Cond2Labels = NA, ErrorBar = TRUE, VWPreTheme = TRUE),
nrow=2, ncol=1)
## ---- eval= TRUE, fig.show='hold', fig.width=7, fig.height=8, results='asis', message=FALSE----
plot_avg_cdiff(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumn = "IA_1_P", Condition = list(talker = c("EN3", "CH1")),
CondLabels = c(CH1 = "Chinese 1", EN3 = "English 1"),
ErrorBar = TRUE, VWPreTheme = TRUE, Averaging = "Subject")
## ---- eval= TRUE, fig.show='hold', results='asis', message=FALSE--------------
plot_avg_contour(data = dat, IA = "IA_1_P", type = "proportion", Var = "Rating",
VarLabel = "Accent Rating", xlim = c(0,1000), VWPreTheme = TRUE,
Colors = c("gray20", "gray90"))
## ---- eval= TRUE, fig.show='hold', results='asis', message=FALSE--------------
plot_avg_contour(data = dat, IA = "IA_1_P", type = "proportion", Var = "Rating",
VarLabel = "Accent Rating", xlim = c(0,1000), VWPreTheme = TRUE,
Colors = c("red", "green")) + ggtitle("Looks to target")
## ---- eval= TRUE, results='asis', message=FALSE-------------------------------
plt <- plot_avg(data = dat, type = "proportion", xlim = c(0, 1000),
IAColumns = c(IA_1_P = "Target", IA_2_P = "Rhyme", IA_3_P = "OnsetComp",
IA_4_P = "Distractor"),
Condition1 = NULL, Condition2 = NULL, Cond1Labels = NA, Cond2Labels = NA,
ErrorBar = TRUE, VWPreTheme = TRUE)
## ---- eval= TRUE, results='asis', message=FALSE-------------------------------
df <- plt$data
## ---- eval= TRUE, echo=FALSE, results='asis', message=FALSE-------------------
knitr::kable(head(df))
## ---- eval= FALSE, results='asis', message=FALSE------------------------------
# model <- mgcv::bam(IA_1_ELogit ~ s(Time), data = dat)
## ---- eval = TRUE, echo = FALSE, results='hide', message=FALSE----------------
# save(model, file = "model.rda", compress = "xz")
load(file = "model.rda")
## ---- eval= TRUE, results='asis', message=FALSE-------------------------------
pelogit <- make_pelogit_fnc(ObsPerBin=50, Constant=0.5)
df <- data.frame(Fitted = fitted(model), Backtransformed = pelogit(fitted(model)))
## ---- eval= TRUE, echo=FALSE, results='asis', message=FALSE-------------------
knitr::kable(df[10:20,])
## ---- eval= TRUE, results='hide', fig.width=7, fig.height=8, message=FALSE----
par(mfrow=c(2,1))
itsadug::plot_smooth(model, view = "Time")
itsadug::plot_smooth(model, view = "Time", transform = pelogit)
## ---- eval=FALSE, echo=TRUE, results='asis'-----------------------------------
# plot_transformation_app()
## ---- eval=FALSE, echo=TRUE, results='asis'-----------------------------------
# plot_var_app(dat)
## ---- eval=FALSE, echo=TRUE, results='asis'-----------------------------------
# plot_indiv_app(dat)
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