WGCNA: Weighted Correlation Network Analysis

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Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.

Author
Peter Langfelder <Peter.Langfelder@gmail.com> and Steve Horvath <SHorvath@mednet.ucla.edu> with contributions by Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang
Date of publication
2016-03-15 00:24:08
Maintainer
Peter Langfelder <Peter.Langfelder@gmail.com>
License
GPL (>= 2)
Version
1.51
URLs

View on CRAN

Man pages

accuracyMeasures
Accuracy measures for a 2x2 confusion matrix or for vectors...
addErrorBars
Add error bars to a barplot.
addGrid
Add grid lines to an existing plot.
addGuideLines
Add vertical "guide lines" to a dendrogram plot
addTraitToMEs
Add trait information to multi-set module eigengene structure
adjacency
Calculate network adjacency
adjacency.polyReg
Adjacency matrix based on polynomial regression
adjacency.splineReg
Calculate network adjacency based on natural cubic spline...
AFcorMI
Prediction of Weighted Mutual Information Adjacency Matrix by...
alignExpr
Align expression data with given vector
allocateJobs
Divide tasks among workers
allowWGCNAThreads
Allow and disable multi-threading for certain WGCNA...
automaticNetworkScreening
One-step automatic network gene screening
automaticNetworkScreeningGS
One-step automatic network gene screening with external gene...
bicor
Biweight Midcorrelation
bicorAndPvalue
Calculation of biweight midcorrelations and associated...
bicovWeights
Weights used in biweight midcovariance
blockSize
Attempt to calculate an appropriate block size to maximize...
blockwiseConsensusModules
Find consensus modules across several datasets.
blockwiseIndividualTOMs
Calculation of block-wise topological overlaps
blockwiseModules
Automatic network construction and module detection
BloodLists
Blood Cell Types with Corresponding Gene Markers
blueWhiteRed
Blue-white-red color sequence
BrainLists
Brain-Related Categories with Corresponding Gene Markers
BrainRegionMarkers
Gene Markers for Regions of the Human Brain
branchEigengeneDissim
Branch dissimilarity based on eigennodes (eigengenes).
branchSplit
Branch split.
branchSplit.dissim
Branch split based on dissimilarity.
branchSplitFromStabilityLabels
Branch split (dissimilarity) statistic derived from labels...
checkAdjMat
Check adjacency matrix
checkSets
Check structure and retrieve sizes of a group of datasets.
chooseOneHubInEachModule
Chooses a single hub gene in each module
chooseTopHubInEachModule
Chooses the top hub gene in each module
clusterCoef
Clustering coefficient calculation
coClustering
Co-clustering measure of cluster preservation between two...
coClustering.permutationTest
Permutation test for co-clustering
collapseRows
Select one representative row per group
collapseRowsUsingKME
Selects one representative row per group based on kME
collectGarbage
Iterative garbage collection.
colQuantileC
Fast colunm- and row-wise quantile of a matrix.
conformityBasedNetworkConcepts
Calculation of conformity-based network concepts.
conformityDecomposition
Conformity and module based decomposition of a network...
consensusDissTOMandTree
Consensus clustering based on topological overlap and...
consensusKME
Calculate consensus kME (eigengene-based connectivities)...
consensusMEDissimilarity
Consensus dissimilarity of module eigengenes.
consensusOrderMEs
Put close eigenvectors next to each other in several sets.
consensusProjectiveKMeans
Consensus projective K-means (pre-)clustering of expression...
consensusRepresentatives
Consensus selection of group representatives
consensusTOM
Consensus network (topological overlap).
cor
Fast calculations of Pearson correlation.
corAndPvalue
Calculation of correlations and associated p-values
corPredictionSuccess
Qunatification of success of gene screening
corPvalueFisher
Fisher's asymptotic p-value for correlation
corPvalueStudent
Student asymptotic p-value for correlation
correlationPreservation
Preservation of eigengene correlations
coxRegressionResiduals
Deviance- and martingale residuals from a Cox regression...
cutreeStatic
Constant-height tree cut
cutreeStaticColor
Constant height tree cut using color labels
displayColors
Show colors used to label modules
dynamicMergeCut
Threshold for module merging
empiricalBayesLM
Empirical Bayes-moderated adjustment for unwanted covariates
exportNetworkToCytoscape
Export network to Cytoscape
exportNetworkToVisANT
Export network data in format readable by VisANT
fixDataStructure
Put single-set data into a form useful for multiset...
formatLabels
Break long character strings into multiple lines
fundamentalNetworkConcepts
Calculation of fundamental network concepts from an adjacency...
GOenrichmentAnalysis
Calculation of GO enrichment (experimental)
goodGenes
Filter genes with too many missing entries
goodGenesMS
Filter genes with too many missing entries across multiple...
goodSamples
Filter samples with too many missing entries
goodSamplesGenes
Iterative filtering of samples and genes with too many...
goodSamplesGenesMS
Iterative filtering of samples and genes with too many...
goodSamplesMS
Filter samples with too many missing entries across multiple...
greenBlackRed
Green-black-red color sequence
greenWhiteRed
Green-white-red color sequence
GTOMdist
Generalized Topological Overlap Measure
hubGeneSignificance
Hubgene significance
ImmunePathwayLists
Immune Pathways with Corresponding Gene Markers
initProgInd
Inline display of progress
intramodularConnectivity
Calculation of intramodular connectivity
isMultiData
Determine whether the supplied object is a valid multiData...
keepCommonProbes
Keep probes that are shared among given data sets
kMEcomparisonScatterplot
Function to plot kME values between two comparable data sets.
labeledBarplot
Barplot with text or color labels.
labeledHeatmap
Produce a labeled heatmap plot
labeledHeatmap.multiPage
Labeled heatmap divided into several separate plots.
labelPoints
Label scatterplot points
labels2colors
Convert numerical labels to colors.
list2multiData
Convert a list to a multiData structure and vice-versa.
lowerTri2matrix
Reconstruct a symmetric matrix from a distance...
matchLabels
Relabel module labels to best match the given reference...
matrixToNetwork
Construct a network from a matrix
mergeCloseModules
Merge close modules in gene expression data
metaAnalysis
Meta-analysis of binary and continuous variables
metaZfunction
Meta-analysis Z statistic
moduleColor.getMEprefix
Get the prefix used to label module eigengenes.
moduleEigengenes
Calculate module eigengenes.
moduleMergeUsingKME
Merge modules and reassign genes using kME.
moduleNumber
Fixed-height cut of a dendrogram.
modulePreservation
Calculation of module preservation statistics
mtd.apply
Apply a function to each set in a multiData structure.
mtd.mapply
Apply a function to elements of given multiData structures.
mtd.rbindSelf
Turn a multiData structure into a single matrix or data...
mtd.setAttr
Set attributes on each component of a multiData structure
mtd.setColnames
Get and set column names in a multiData structure.
mtd.simplify
If possible, simplify a multiData structure to a...
mtd.subset
Subset rows and columns in a multiData structure
multiData
Create a multiData structure.
multiData.eigengeneSignificance
Eigengene significance across multiple sets
multiSetMEs
Calculate module eigengenes.
multiUnion
Union and intersection of multiple sets
mutualInfoAdjacency
Calculate weighted adjacency matrices based on mutual...
nearestCentroidPredictor
Nearest centroid predictor
nearestNeighborConnectivity
Connectivity to a constant number of nearest neighbors
nearestNeighborConnectivityMS
Connectivity to a constant number of nearest neighbors across...
networkConcepts
Calculations of network concepts
networkScreening
Identification of genes related to a trait
networkScreeningGS
Network gene screening with an external gene significance...
normalizeLabels
Transform numerical labels into normal order.
nPresent
Number of present data entries.
nSets
Number of sets in a multi-set variable
numbers2colors
Color representation for a numeric variable
orderBranchesUsingHubGenes
Optimize dendrogram using branch swaps and reflections.
orderMEs
Put close eigenvectors next to each other
overlapTable
Calculate overlap of modules
overlapTableUsingKME
Determines significant overlap between modules in two...
pickHardThreshold
Analysis of scale free topology for hard-thresholding.
pickSoftThreshold
Analysis of scale free topology for soft-thresholding
plotClusterTreeSamples
Annotated clustering dendrogram of microarray samples
plotColorUnderTree
Plot color rows in a given order, for example under a...
plotCor
Red and Green Color Image of Correlation Matrix
plotDendroAndColors
Dendrogram plot with color annotation of objects
plotEigengeneNetworks
Eigengene network plot
plotMat
Red and Green Color Image of Data Matrix
plotMEpairs
Pairwise scatterplots of eigengenes
plotModuleSignificance
Barplot of module significance
plotNetworkHeatmap
Network heatmap plot
populationMeansInAdmixture
Estimate the population-specific mean values in an admixed...
pquantile
Parallel quantile, median, mean
prepComma
Prepend a comma to a non-empty string
prependZeros
Pad numbers with leading zeros to specified total width
preservationNetworkConnectivity
Network preservation calculations
projectiveKMeans
Projective K-means (pre-)clustering of expression data
proportionsInAdmixture
Estimate the proportion of pure populations in an admixed...
propVarExplained
Proportion of variance explained by eigengenes.
PWLists
Pathways with Corresponding Gene Markers - Compiled by Mike...
qvalue
Estimate the q-values for a given set of p-values
qvalue.restricted
qvalue convenience wrapper
randIndex
Rand index of two partitions
rankPvalue
Estimate the p-value for ranking consistently high (or low)...
recutBlockwiseTrees
Repeat blockwise module detection from pre-calculated data
recutConsensusTrees
Repeat blockwise consensus module detection from...
redWhiteGreen
Red-white-green color sequence
relativeCorPredictionSuccess
Compare prediction success
removeGreyME
Removes the grey eigengene from a given collection of...
removePrincipalComponents
Remove leading principal components from data
returnGeneSetsAsList
Return pre-defined gene lists in several biomedical...
rgcolors.func
Red and Green Color Specification
scaleFreeFitIndex
Calculation of fitting statistics for evaluating scale free...
scaleFreePlot
Visual check of scale-free topology
SCsLists
Stem Cell-Related Genes with Corresponding Gene Markers
selectFewestConsensusMissing
Select columns with the lowest consensus number of missing...
setCorrelationPreservation
Summary correlation preservation measure
shortenStrings
Shorten given character strings by truncating at a suitable...
sigmoidAdjacencyFunction
Sigmoid-type adacency function.
signedKME
Signed eigengene-based connectivity
signumAdjacencyFunction
Hard-thresholding adjacency function
simulateDatExpr
Simulation of expression data
simulateDatExpr5Modules
Simplified simulation of expression data
simulateEigengeneNetwork
Simulate eigengene network from a causal model
simulateModule
Simulate a gene co-expression module
simulateMultiExpr
Simulate multi-set expression data
simulateSmallLayer
Simulate small modules
sizeGrWindow
Opens a graphics window with specified dimensions
softConnectivity
Calculates connectivity of a weighted network.
spaste
Space-less paste
standardColors
Colors this library uses for labeling modules.
standardScreeningBinaryTrait
Standard screening for binatry traits
standardScreeningCensoredTime
Standard Screening with regard to a Censored Time Variable
standardScreeningNumericTrait
Standard screening for numeric traits
stdErr
Standard error of the mean of a given vector.
stratifiedBarplot
Bar plots of data across two splitting parameters
subsetTOM
Topological overlap for a subset of a whole set of genes
swapTwoBranches
Select, swap, or reflect branches in a dendrogram.
TOMplot
Graphical representation of the Topological Overlap Matrix
TOMsimilarity
Topological overlap matrix similarity and dissimilarity
TOMsimilarityFromExpr
Topological overlap matrix
transposeBigData
Transpose a big matrix or data frame
TrueTrait
Estimate the true trait underlying a list of surrogate...
unsignedAdjacency
Calculation of unsigned adjacency
userListEnrichment
Measure enrichment between inputted and user-defined lists
vectorizeMatrix
Turn a matrix into a vector of non-redundant components
vectorTOM
Topological overlap for a subset of the whole set of genes
verboseBarplot
Barplot with error bars, annotated by Kruskal-Wallis or ANOVA...
verboseBoxplot
Boxplot annotated by a Kruskal-Wallis p-value
verboseIplot
Scatterplot with density
verboseScatterplot
Scatterplot annotated by regression line and p-value
votingLinearPredictor
Voting linear predictor
WGCNA-package
Weighted Gene Co-Expression Network Analysis

Files in this package

WGCNA
WGCNA/inst
WGCNA/inst/CITATION
WGCNA/src
WGCNA/src/pivot.h
WGCNA/src/quantileC.cc
WGCNA/src/Makevars
WGCNA/src/compiling.h
WGCNA/src/corFunctions-common.h
WGCNA/src/array.h
WGCNA/src/bucketApproxSort.cc
WGCNA/src/corFunctions-unified.c
WGCNA/src/corFunctions-common.c
WGCNA/src/corFunctions.h
WGCNA/src/pivot.c
WGCNA/src/networkFunctions.c
WGCNA/src/exceptions.h
WGCNA/src/Makevars.win
WGCNA/src/arrayGeneric.h
WGCNA/NAMESPACE
WGCNA/data
WGCNA/data/BrainRegionMarkers.rda
WGCNA/data/BrainLists.rda
WGCNA/data/BloodLists.rda
WGCNA/data/PWLists.rda
WGCNA/data/ImmunePathwayLists.rda
WGCNA/data/SCsLists.rda
WGCNA/Changelog
WGCNA/R
WGCNA/R/adjacency.polyReg.R
WGCNA/R/networkConcepts.R
WGCNA/R/stratifiedBarplot.R
WGCNA/R/modulePreservation.R
WGCNA/R/Functions.R
WGCNA/R/GOenrichmentAnalysis.R
WGCNA/R/verboseIplot.R
WGCNA/R/adjacency.splineReg.R
WGCNA/R/standardScreeningBinaryTrait.R
WGCNA/R/corAndPvalue.R
WGCNA/R/consensusTOM.R
WGCNA/R/qvalue.R
WGCNA/R/nearestCentroidPredictor.R
WGCNA/R/heatmapWithLegend.R
WGCNA/R/matchLabels.R
WGCNA/R/labelPoints.R
WGCNA/R/dendrogramAdjustmentFunctions.R
WGCNA/R/votingLinearPredictor.R
WGCNA/R/branchSplit.R
WGCNA/R/returnGeneSetsAsList.R
WGCNA/R/proportionsInAdmixture.R
WGCNA/R/TrueTrait.R
WGCNA/R/overlapTableUsingKME.R
WGCNA/R/userListEnrichment.R
WGCNA/R/transposeBigData.R
WGCNA/R/plotDendrogram.R
WGCNA/R/kMEcomparisonScatterplot.R
WGCNA/R/collapseRows.R
WGCNA/R/Functions-fromSimilarity.R
WGCNA/R/populationMeansInAdmixture.R
WGCNA/R/AFcorMI.R
WGCNA/R/blockwiseModulesC.R
WGCNA/R/pquantile.R
WGCNA/R/consensusDissTOMandTree.R
WGCNA/R/moduleMergeUsingKME.R
WGCNA/R/empiricalBayesLM.R
WGCNA/R/mutualInfoAdjacency.R
WGCNA/R/smaFunctions.R
WGCNA/R/coxRegressionResiduals.R
WGCNA/R/quantileC.R
WGCNA/R/collapseRowsUsingKME.R
WGCNA/R/exportFunctions.R
WGCNA/R/bucketOrder.R
WGCNA/R/internalConstants.R
WGCNA/R/useNThreads.R
WGCNA/R/consensusRepresentatives.R
WGCNA/R/coClustering.R
WGCNA/R/multiData.R
WGCNA/R/conformityDecomposition.R
WGCNA/R/corFunctions.R
WGCNA/R/Functions-multiData.R
WGCNA/R/zzz.R
WGCNA/R/accuracyMeasures.R
WGCNA/MD5
WGCNA/DESCRIPTION
WGCNA/man
WGCNA/man/corPredictionSuccess.Rd
WGCNA/man/allowWGCNAThreads.Rd
WGCNA/man/TrueTrait.Rd
WGCNA/man/transposeBigData.Rd
WGCNA/man/removeGreyME.Rd
WGCNA/man/mtd.setColnames.Rd
WGCNA/man/accuracyMeasures.Rd
WGCNA/man/plotMat.Rd
WGCNA/man/signumAdjacencyFunction.Rd
WGCNA/man/adjacency.Rd
WGCNA/man/sigmoidAdjacencyFunction.Rd
WGCNA/man/nearestCentroidPredictor.Rd
WGCNA/man/projectiveKMeans.Rd
WGCNA/man/conformityBasedNetworkConcepts.Rd
WGCNA/man/overlapTable.Rd
WGCNA/man/bicorAndPvalue.Rd
WGCNA/man/chooseTopHubInEachModule.Rd
WGCNA/man/blueWhiteRed.Rd
WGCNA/man/consensusOrderMEs.Rd
WGCNA/man/branchSplitFromStabilityLabels.Rd
WGCNA/man/orderMEs.Rd
WGCNA/man/mtd.mapply.Rd
WGCNA/man/collectGarbage.Rd
WGCNA/man/networkScreeningGS.Rd
WGCNA/man/WGCNA-package.Rd
WGCNA/man/orderBranchesUsingHubGenes.Rd
WGCNA/man/multiUnion.Rd
WGCNA/man/sizeGrWindow.Rd
WGCNA/man/normalizeLabels.Rd
WGCNA/man/GOenrichmentAnalysis.Rd
WGCNA/man/labeledHeatmap.Rd
WGCNA/man/goodSamples.Rd
WGCNA/man/scaleFreeFitIndex.Rd
WGCNA/man/goodSamplesGenes.Rd
WGCNA/man/isMultiData.Rd
WGCNA/man/plotCor.Rd
WGCNA/man/empiricalBayesLM.Rd
WGCNA/man/consensusKME.Rd
WGCNA/man/plotModuleSignificance.Rd
WGCNA/man/chooseOneHubInEachModule.Rd
WGCNA/man/multiData.eigengeneSignificance.Rd
WGCNA/man/consensusProjectiveKMeans.Rd
WGCNA/man/nearestNeighborConnectivity.Rd
WGCNA/man/automaticNetworkScreening.Rd
WGCNA/man/TOMsimilarityFromExpr.Rd
WGCNA/man/standardScreeningBinaryTrait.Rd
WGCNA/man/checkAdjMat.Rd
WGCNA/man/cutreeStatic.Rd
WGCNA/man/rankPvalue.Rd
WGCNA/man/exportNetworkToCytoscape.Rd
WGCNA/man/subsetTOM.Rd
WGCNA/man/kMEcomparisonScatterplot.Rd
WGCNA/man/metaZfunction.Rd
WGCNA/man/bicor.Rd
WGCNA/man/ImmunePathwayLists.Rd
WGCNA/man/collapseRows.Rd
WGCNA/man/simulateSmallLayer.Rd
WGCNA/man/cor.Rd
WGCNA/man/prependZeros.Rd
WGCNA/man/networkConcepts.Rd
WGCNA/man/corAndPvalue.Rd
WGCNA/man/goodSamplesGenesMS.Rd
WGCNA/man/blockSize.Rd
WGCNA/man/coxRegressionResiduals.Rd
WGCNA/man/addTraitToMEs.Rd
WGCNA/man/standardScreeningNumericTrait.Rd
WGCNA/man/simulateDatExpr5Modules.Rd
WGCNA/man/plotEigengeneNetworks.Rd
WGCNA/man/branchSplit.Rd
WGCNA/man/populationMeansInAdmixture.Rd
WGCNA/man/mtd.rbindSelf.Rd
WGCNA/man/matrixToNetwork.Rd
WGCNA/man/mtd.subset.Rd
WGCNA/man/pickSoftThreshold.Rd
WGCNA/man/selectFewestConsensusMissing.Rd
WGCNA/man/lowerTri2matrix.Rd
WGCNA/man/moduleColor.getMEprefix.Rd
WGCNA/man/plotClusterTreeSamples.Rd
WGCNA/man/labelPoints.Rd
WGCNA/man/bicovWeights.Rd
WGCNA/man/corPvalueStudent.Rd
WGCNA/man/automaticNetworkScreeningGS.Rd
WGCNA/man/mtd.setAttr.Rd
WGCNA/man/addGuideLines.Rd
WGCNA/man/vectorizeMatrix.Rd
WGCNA/man/fixDataStructure.Rd
WGCNA/man/signedKME.Rd
WGCNA/man/consensusRepresentatives.Rd
WGCNA/man/TOMsimilarity.Rd
WGCNA/man/labeledHeatmap.multiPage.Rd
WGCNA/man/dynamicMergeCut.Rd
WGCNA/man/alignExpr.Rd
WGCNA/man/consensusTOM.Rd
WGCNA/man/returnGeneSetsAsList.Rd
WGCNA/man/mergeCloseModules.Rd
WGCNA/man/verboseScatterplot.Rd
WGCNA/man/colQuantileC.Rd
WGCNA/man/numbers2colors.Rd
WGCNA/man/coClustering.permutationTest.Rd
WGCNA/man/multiData.Rd
WGCNA/man/labels2colors.Rd
WGCNA/man/nearestNeighborConnectivityMS.Rd
WGCNA/man/consensusMEDissimilarity.Rd
WGCNA/man/nSets.Rd
WGCNA/man/matchLabels.Rd
WGCNA/man/SCsLists.Rd
WGCNA/man/simulateDatExpr.Rd
WGCNA/man/standardScreeningCensoredTime.Rd
WGCNA/man/greenWhiteRed.Rd
WGCNA/man/collapseRowsUsingKME.Rd
WGCNA/man/blockwiseConsensusModules.Rd
WGCNA/man/exportNetworkToVisANT.Rd
WGCNA/man/stdErr.Rd
WGCNA/man/TOMplot.Rd
WGCNA/man/allocateJobs.Rd
WGCNA/man/BrainRegionMarkers.Rd
WGCNA/man/removePrincipalComponents.Rd
WGCNA/man/redWhiteGreen.Rd
WGCNA/man/coClustering.Rd
WGCNA/man/simulateMultiExpr.Rd
WGCNA/man/prepComma.Rd
WGCNA/man/rgcolors.func.Rd
WGCNA/man/intramodularConnectivity.Rd
WGCNA/man/moduleEigengenes.Rd
WGCNA/man/goodSamplesMS.Rd
WGCNA/man/setCorrelationPreservation.Rd
WGCNA/man/plotNetworkHeatmap.Rd
WGCNA/man/blockwiseIndividualTOMs.Rd
WGCNA/man/propVarExplained.Rd
WGCNA/man/BrainLists.Rd
WGCNA/man/checkSets.Rd
WGCNA/man/addErrorBars.Rd
WGCNA/man/goodGenesMS.Rd
WGCNA/man/relativeCorPredictionSuccess.Rd
WGCNA/man/qvalue.Rd
WGCNA/man/scaleFreePlot.Rd
WGCNA/man/nPresent.Rd
WGCNA/man/preservationNetworkConnectivity.Rd
WGCNA/man/spaste.Rd
WGCNA/man/verboseBoxplot.Rd
WGCNA/man/keepCommonProbes.Rd
WGCNA/man/conformityDecomposition.Rd
WGCNA/man/standardColors.Rd
WGCNA/man/proportionsInAdmixture.Rd
WGCNA/man/cutreeStaticColor.Rd
WGCNA/man/labeledBarplot.Rd
WGCNA/man/overlapTableUsingKME.Rd
WGCNA/man/multiSetMEs.Rd
WGCNA/man/hubGeneSignificance.Rd
WGCNA/man/mutualInfoAdjacency.Rd
WGCNA/man/pquantile.Rd
WGCNA/man/shortenStrings.Rd
WGCNA/man/simulateEigengeneNetwork.Rd
WGCNA/man/verboseIplot.Rd
WGCNA/man/simulateModule.Rd
WGCNA/man/addGrid.Rd
WGCNA/man/greenBlackRed.Rd
WGCNA/man/softConnectivity.Rd
WGCNA/man/clusterCoef.Rd
WGCNA/man/branchSplit.dissim.Rd
WGCNA/man/qvalue.restricted.Rd
WGCNA/man/pickHardThreshold.Rd
WGCNA/man/initProgInd.Rd
WGCNA/man/recutBlockwiseTrees.Rd
WGCNA/man/formatLabels.Rd
WGCNA/man/networkScreening.Rd
WGCNA/man/corPvalueFisher.Rd
WGCNA/man/mtd.simplify.Rd
WGCNA/man/goodGenes.Rd
WGCNA/man/vectorTOM.Rd
WGCNA/man/adjacency.polyReg.Rd
WGCNA/man/adjacency.splineReg.Rd
WGCNA/man/modulePreservation.Rd
WGCNA/man/swapTwoBranches.Rd
WGCNA/man/consensusDissTOMandTree.Rd
WGCNA/man/BloodLists.Rd
WGCNA/man/plotDendroAndColors.Rd
WGCNA/man/plotColorUnderTree.Rd
WGCNA/man/metaAnalysis.Rd
WGCNA/man/plotMEpairs.Rd
WGCNA/man/verboseBarplot.Rd
WGCNA/man/stratifiedBarplot.Rd
WGCNA/man/GTOMdist.Rd
WGCNA/man/fundamentalNetworkConcepts.Rd
WGCNA/man/blockwiseModules.Rd
WGCNA/man/correlationPreservation.Rd
WGCNA/man/list2multiData.Rd
WGCNA/man/userListEnrichment.Rd
WGCNA/man/recutConsensusTrees.Rd
WGCNA/man/mtd.apply.Rd
WGCNA/man/votingLinearPredictor.Rd
WGCNA/man/displayColors.Rd
WGCNA/man/unsignedAdjacency.Rd
WGCNA/man/AFcorMI.Rd
WGCNA/man/moduleNumber.Rd
WGCNA/man/moduleMergeUsingKME.Rd
WGCNA/man/branchEigengeneDissim.Rd
WGCNA/man/randIndex.Rd
WGCNA/man/PWLists.Rd