branchSplit: Branch split.

In WGCNA: Weighted Correlation Network Analysis

Branch split.

Description

Calculation of branch split based on expression data. This function is used as a plugin for the dynamicTreeCut package and the user should not call this function directly.

Usage

branchSplit(
  expr, 
  branch1, branch2, 
  discardProp = 0.05, minCentralProp = 0.75, 
  nConsideredPCs = 3, 
  signed = FALSE, 
  getDetails = TRUE, ...)

Arguments

expr	Expression data.
branch1	Branch 1,
branch2	Branch 2.
discardProp	Proportion of data to be discarded as outliers.
minCentralProp	Minimum central proportion
nConsideredPCs	Number of principal components to consider.
signed	Should the network be considered signed?
getDetails	Should details of the calculation be returned?
...	Other arguments. Present for compatibility; currently unusued.

Value

A single number or a list containing detils of the calculation.

Author(s)

Peter Langfelder

WGCNA documentation built on Sept. 18, 2024, 5:08 p.m.