branchSplit: Branch split.

View source: R/branchSplit.R

branchSplitR Documentation

Branch split.

Description

Calculation of branch split based on expression data. This function is used as a plugin for the dynamicTreeCut package and the user should not call this function directly.

Usage

branchSplit(
  expr, 
  branch1, branch2, 
  discardProp = 0.05, minCentralProp = 0.75, 
  nConsideredPCs = 3, 
  signed = FALSE, 
  getDetails = TRUE, ...)

Arguments

expr

Expression data.

branch1

Branch 1,

branch2

Branch 2.

discardProp

Proportion of data to be discarded as outliers.

minCentralProp

Minimum central proportion

nConsideredPCs

Number of principal components to consider.

signed

Should the network be considered signed?

getDetails

Should details of the calculation be returned?

...

Other arguments. Present for compatibility; currently unusued.

Value

A single number or a list containing detils of the calculation.

Author(s)

Peter Langfelder


WGCNA documentation built on April 23, 2022, 1:06 a.m.

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