BrainLists: Brain-Related Categories with Corresponding Gene Markers

In WGCNA: Weighted Correlation Network Analysis

Brain-Related Categories with Corresponding Gene Markers

Description

This matrix gives a predefined set of marker genes for many brain-related categories (ie., cell type, organelle, changes with disease, etc.), as reported in several previously-published studies. It is used with userListEnrichment to search user-defined gene lists for enrichment.

Usage

data(BrainLists)

Format

A 48319 x 2 matrix of characters containing Gene / Category pairs. The first column (Gene) lists genes corresponding to a given category (second column). Each Category entry is of the form <Brain descriptor>__<reference>, where the references can be found at userListEnrichment. Note that the matrix is sorted first by Category and then by Gene, such that all genes related to the same category are listed sequentially.

Source

For references used in this variable, please see userListEnrichment

Examples

data(BrainLists)
head(BrainLists)

WGCNA documentation built on Sept. 18, 2024, 5:08 p.m.