abcrf: Approximate Bayesian Computation via Random Forests
Version 1.5

Performs Approximate Bayesian Computation (ABC) model choice and parameter inference via random forests.

Browse man pages Browse package API and functions Browse package files

AuthorJean-Michel Marin [aut, cre], Louis Raynal [aut], Pierre Pudlo [aut], Christian P. Robert [ctb], Arnaud Estoup [ctb]
Date of publication2017-01-04 11:37:07
MaintainerJean-Michel Marin <jean-michel.marin@umontpellier.fr>
LicenseGPL (>= 2)
Version1.5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("abcrf")

Man pages

abcrf: Create an ABC-RF object: a classification random forest from...
covRegAbcrf: Predict posterior covariance between two parameters for new...
densityPlot: Plot the posterior density given a new summary statistic
err.abcrf: Calculate and plot for different numbers of tree, the...
err.regAbcrf: Calculate and plot for different numbers of tree, the...
plot.abcrf: Plot of an ABC-RF object
plot.regAbcrf: Plot of a reg-ABC-RF object
predict.abcrf: Predict and evaluate the posterior probability of the MAP for...
predict.regAbcrf: Predict posterior expectation, median, variance and quantiles...
readRefTable: Read a reference table simulated from DIYABC
regAbcrf: Create a reg-ABC-RF object: a regression random forest from a...
snp: A simulated example in population genetics
variableImpPlot: Variable importance plot from a random forest

Functions

abcrf Man page Source code
abcrf.default Source code
abcrf.formula Man page Source code
as.data.frame.abcrfpredict Source code
as.data.frame.regAbcrfpredict Source code
as.list.abcrfpredict Source code
as.list.regAbcrfpredict Source code
as.matrix.abcrfpredict Source code
as.matrix.regAbcrfpredict Source code
covRegAbcrf Man page Source code
covRegAbcrf.regAbcrf Man page Source code
densityPlot Man page Source code
densityPlot.regAbcrf Man page Source code
err.abcrf Man page Source code
err.regAbcrf Man page Source code
onLoad Source code
plot.abcrf Man page Source code
plot.regAbcrf Man page Source code
predict.abcrf Man page Source code
predict.regAbcrf Man page Source code
print.abcrf Source code
print.abcrfpredict Source code
print.regAbcrf Source code
print.regAbcrfpredict Source code
readRefTable Man page Source code
regAbcrf Man page Source code
regAbcrf.default Source code
regAbcrf.formula Man page Source code
snp Man page
snp.obs Man page
summary.abcrfpredict Source code
variableImpPlot Man page Source code

Files

src
src/findweightsAmelioree.c
NAMESPACE
data
data/snp.obs.RData
data/snp.RData
data/datalist
R
R/zzzz.R
R/plot.abcrf.R
R/readRefTable.R
R/plot.regAbcrf.R
R/predict.abcrf.R
R/regAbcrf.R
R/densityPlot.R
R/err.abcrf.R
R/covRegAbcrf.R
R/predict.regAbcrf.R
R/err.regAbcrf.R
R/abcrf.R
R/variableImpPlot.R
MD5
DESCRIPTION
man
man/plot.abcrf.Rd
man/readRefTable.Rd
man/plot.regAbcrf.Rd
man/regAbcrf.Rd
man/err.regAbcrf.Rd
man/variableImpPlot.Rd
man/snp.Rd
man/predict.regAbcrf.Rd
man/abcrf.Rd
man/err.abcrf.Rd
man/densityPlot.Rd
man/covRegAbcrf.Rd
man/predict.abcrf.Rd
abcrf documentation built on May 20, 2017, 2:14 a.m.