abcrf: Approximate Bayesian Computation via Random Forests

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Performs Approximate Bayesian Computation (ABC) model choice and parameter inference via random forests.

Author
Jean-Michel Marin [aut, cre], Louis Raynal [aut], Pierre Pudlo [aut], Christian P. Robert [ctb], Arnaud Estoup [ctb]
Date of publication
2016-11-30 18:31:19
Maintainer
Jean-Michel Marin <jean-michel.marin@umontpellier.fr>
License
GPL (>= 2)
Version
1.4

View on CRAN

Man pages

abcrf
Create an ABC-RF object: a classification random forest from...
covRegAbcrf
Predict posterior covariance between two parameters for new...
densityPlot
Plot the posterior density given a new summary statistic
err.abcrf
Calculate and plot for different numbers of tree, the...
err.regAbcrf
Calculate and plot for different numbers of tree, the...
plot.abcrf
Plot of an ABC-RF object
plot.regAbcrf
Plot of a reg-ABC-RF object
predict.abcrf
Predict and evaluate the posterior probability of the MAP for...
predict.regAbcrf
Predict posterior expectation, median, variance and quantiles...
readRefTable
Read a reference table simulated from DIYABC
regAbcrf
Create a reg-ABC-RF object: a regression random forest from a...
snp
A simulated example in population genetics
variableImpPlot
Variable importance plot from a random forest

Files in this package

abcrf
abcrf/src
abcrf/src/findweightsAmelioree.c
abcrf/NAMESPACE
abcrf/data
abcrf/data/snp.obs.RData
abcrf/data/snp.RData
abcrf/data/datalist
abcrf/R
abcrf/R/zzzz.R
abcrf/R/plot.abcrf.R
abcrf/R/readRefTable.R
abcrf/R/plot.regAbcrf.R
abcrf/R/predict.abcrf.R
abcrf/R/regAbcrf.R
abcrf/R/densityPlot.R
abcrf/R/err.abcrf.R
abcrf/R/covRegAbcrf.R
abcrf/R/predict.regAbcrf.R
abcrf/R/err.regAbcrf.R
abcrf/R/abcrf.R
abcrf/R/variableImpPlot.R
abcrf/MD5
abcrf/DESCRIPTION
abcrf/man
abcrf/man/plot.abcrf.Rd
abcrf/man/readRefTable.Rd
abcrf/man/plot.regAbcrf.Rd
abcrf/man/regAbcrf.Rd
abcrf/man/err.regAbcrf.Rd
abcrf/man/variableImpPlot.Rd
abcrf/man/snp.Rd
abcrf/man/predict.regAbcrf.Rd
abcrf/man/abcrf.Rd
abcrf/man/err.abcrf.Rd
abcrf/man/densityPlot.Rd
abcrf/man/covRegAbcrf.Rd
abcrf/man/predict.abcrf.Rd