The simulated example of population genetics with SNP loci used in Pudlo et al.
snp contains the reference table on which to perform ABC model choice, it also contains the simulated parameters to perform regression random forest.
snp.obs contains two pseudo-observed data sets. The first one
favorable) should be easily allocated to a model, while that is not the case for the second one (
snp is a list containing an ABC reference table of 10,000
simulations from a Bayesian prior predictive model (see Pudlo et al., 2016, for a description of the model choice issue). The first element, named
modindex is a
factor containing the model indices, the second element,
param, is a data frame with seven simulated parameters. The last element of this list, named
sumsta, contains the reference table on which to perform ABC model choice and parameter estimation.
snp.obs is a data frame containing the summary statistics of two pseudo-observed data sets.
Pudlo, P., Marin, J.-M., Estoup, A., Cornuet, J.-M., Gautier, M. and Robert, C.P. (2016) Reliable ABC model choice via random forests Bioinformatics https://doi.org/10.1093/bioinformatics/btv684
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