adephylo: Adephylo: Exploratory Analyses for the Phylogenetic Comparative Method

Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa.

Install the latest version of this package by entering the following in R:
install.packages("adephylo")
AuthorThibaut Jombart <t.jombart@imperial.ac.uk>, St├ęphane Dray <stephane.dray@univ-lyon1.fr>, Anders Ellern Bilgrau <abilgrau@math.aau.dk>
Date of publication2016-12-13 07:57:00
MaintainerSt├ęphane Dray <stephane.dray@univ-lyon1.fr>
LicenseGPL (>= 2)
Version1.1-10

View on CRAN

Functions

abouheif.moran Man page
adephylo Man page
adephylo-package Man page
bullseye Man page
carni19 Man page
carni70 Man page
dibas Man page
dibas.dist Man page
dibas.matrix Man page
dibas.phylo Man page
dibas.vector Man page
distRoot Man page
distTips Man page
listDD Man page
listTips Man page
lizards Man page
maples Man page
me.phylo Man page
mjrochet Man page
moran.idx Man page
orthobasis.phylo Man page
orthogram Man page
palm Man page
plot.ppca Man page
ppca Man page
print.ppca Man page
procella Man page
proxTips Man page
scatter.ppca Man page
screeplot.ppca Man page
simDatGroups Man page
sp.tips Man page
summary.ppca Man page
table.phylo4d Man page
.tipToRoot Man page
tithonia Man page
treePart Man page
ungulates Man page

Files

inst
inst/CITATION
inst/doc
inst/doc/adephylo.Rnw
inst/doc/adephylo.pdf
inst/doc/adephylo.R
src
src/adesub.h
src/misc.c
src/sptips.c
src/distPhylo.c
src/sptips.h
src/phylog.c
src/adesub.c
NAMESPACE
data
data/carni19.RData
data/tithonia.RData
data/maples.RData
data/mjrochet.RData
data/procella.RData
data/ungulates.RData
data/carni70.RData
data/lizards.RData
data/palm.RData
R
R/adephylo-package.R R/utils.R R/orthobasis.R R/orthogram.R R/bullseye.R R/proximities.R R/moran.R R/ppca.R R/partition.R R/dibas.R R/table.phylo4d.R R/distances.R R/abouheif.R R/zzz.R
vignettes
vignettes/adephylo.Rnw
vignettes/figs
vignettes/figs/adephylo-017.pdf
vignettes/figs/adephylo-figFourBas.pdf
vignettes/figs/adephylo-lm1.pdf
vignettes/figs/adephylo-pca2.pdf
vignettes/figs/adephylo-loadings.pdf
vignettes/figs/adephylo-012.pdf
vignettes/figs/adephylo-phylo4d.png
vignettes/figs/adephylo-phylo4d.pdf
vignettes/figs/adephylo-016.pdf
vignettes/figs/adephylo-aboutest.pdf
vignettes/figs/adephylo-012.png
vignettes/figs/adephylo-017.png
vignettes/figs/adephylo-resid.pdf
vignettes/figs/adephylo-018.pdf
vignettes/figs/adephylo-treePart.pdf
vignettes/figs/adephylo-treePart.png
vignettes/figs/adephylo-pca1.pdf
vignettes/figs/adephylo-orthobas1.pdf
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/moranIdx.Rd man/sp.tips.Rd man/proxTips.Rd man/adephylo-package.Rd man/procella.Rd man/bullseye.Rd man/orthogram.Rd man/mjrochet.Rd man/listTips.Rd man/table.phylo4d.Rd man/miscUtils.Rd man/abouheif.Rd man/ungulates.Rd man/palm.Rd man/listDD.Rd man/ppca.Rd man/lizards.Rd man/dibas.Rd man/carni19.Rd man/treePart.Rd man/distRoot.Rd man/maples.Rd man/tithonia.Rd man/orthobasis.Rd man/carni70.Rd man/distTips.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.