adespatial: Multivariate Multiscale Spatial Analysis

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Tools for the multiscale spatial analysis of multivariate data. Several methods are based on the use of a spatial weighting matrix and its eigenvector decomposition (Moran's Eigenvectors Maps, MEM).

Author
St├ęphane Dray, Guillaume Blanchet, Daniel Borcard, Guillaume Guenard, Thibaut Jombart, Guillaume Larocque, Pierre Legendre, Helene H Wagner
Date of publication
2016-11-27 15:04:07
Maintainer
St├ęphane Dray <stephane.dray@univ-lyon1.fr>
License
GPL (>= 2)
Version
0.0-6

View on CRAN

Man pages

beta.div
Beta diversity computed as Var(Y)
beta.div.comp
Decompose D in replacement and richness difference components
chooseCN
Function to choose a connection network
Cperiodogram
Contingency periodogram
create.dbMEM.model
Combine dbMEM matrices corresponding to groups of sites
createlistw
Interactive tool to generate R code that creates a spatial...
dbmem
dbMEM spatial eigenfunctions
dist.ldc
Dissimilarity matrices for community composition data
forward.sel
Forward selection with multivariate Y using permutation under...
forward.sel.par
Parametric forward selection of explanatory variables in...
give.thresh
Compute the maximum distance of the minimum spanning tree...
global.rtest
Global and local tests
LCBD.comp
Compute LCBD from any D matrix
mem
Function to compute and manage Moran's Eigenvector Maps (MEM)...
mfpa
Multi-frequential periodogram analysis
moran.bounds
Function to compute extreme values of Moran's I
moranNP.randtest
Function to compute positive and negative parts of Moran's...
moran.randtest
Function to compute Moran's index of spatial autocorrelation
mspa
Multi-Scale Pattern Analysis
msr
Moran spectral randomization
mst.nb
Function to compute neighborhood based on the minimum...
multispati
Multivariate spatial analysis
ortho.AIC
Compute AIC for models with orthonormal explanatory variables
orthobasis.poly
Function to compute polynomial of geographical coordinates
plot.orthobasisSp
Function to display Moran's Eigenvector Maps (MEM) and other...
scalogram
Function to compute a scalogram
stimodels
Space-time interaction in ANOVA without replication
test.W
Function to compute and test eigenvectors of spatial...
trichoptera
Trichoptera data set
variogmultiv
Function to compute multivariate empirical variogram
WRperiodogram
Whittaker-Robinson periodogram

Files in this package

adespatial
adespatial/inst
adespatial/inst/createlistw
adespatial/inst/createlistw/www
adespatial/inst/createlistw/www/style.css
adespatial/inst/createlistw/app.R
adespatial/src
adespatial/src/Makevars
adespatial/src/forward.c
adespatial/src/WRperiodogram.c
adespatial/src/testsmoran.c
adespatial/src/forward.h
adespatial/src/WRperiodogram.h
adespatial/src/betadiv.c
adespatial/NAMESPACE
adespatial/data
adespatial/data/trichoptera.rda
adespatial/R
adespatial/R/plot.orthobasisSp.R
adespatial/R/msr.R
adespatial/R/createlistw.R
adespatial/R/globloc.rtests.R
adespatial/R/scores.listw.R
adespatial/R/WRperiodogram.R
adespatial/R/stimodels.R
adespatial/R/ortho.AIC.R
adespatial/R/Cperiodogram.R
adespatial/R/dbmem.R
adespatial/R/variogmultiv.R
adespatial/R/forward.sel.R
adespatial/R/LCBD.comp.R
adespatial/R/dist.ldc.R
adespatial/R/trichoptera.R
adespatial/R/create.dbMEM.model.R
adespatial/R/beta.div.comp.R
adespatial/R/chooseCN.R
adespatial/R/test.W.R
adespatial/R/mspa.R
adespatial/R/orthobasis.poly.R
adespatial/R/beta.div.R
adespatial/R/moranNP.randtest.R
adespatial/R/forward.sel.par.R
adespatial/R/moran.randtest.R
adespatial/R/mfpa.R
adespatial/R/mst.nb.R
adespatial/R/scalogram.R
adespatial/R/give.thresh.R
adespatial/R/multispati.R
adespatial/R/moran.bounds.R
adespatial/MD5
adespatial/DESCRIPTION
adespatial/man
adespatial/man/forward.sel.Rd
adespatial/man/dbmem.Rd
adespatial/man/beta.div.Rd
adespatial/man/mfpa.Rd
adespatial/man/createlistw.Rd
adespatial/man/global.rtest.Rd
adespatial/man/orthobasis.poly.Rd
adespatial/man/moran.randtest.Rd
adespatial/man/multispati.Rd
adespatial/man/msr.Rd
adespatial/man/Cperiodogram.Rd
adespatial/man/test.W.Rd
adespatial/man/plot.orthobasisSp.Rd
adespatial/man/moranNP.randtest.Rd
adespatial/man/stimodels.Rd
adespatial/man/mspa.Rd
adespatial/man/forward.sel.par.Rd
adespatial/man/ortho.AIC.Rd
adespatial/man/create.dbMEM.model.Rd
adespatial/man/mem.Rd
adespatial/man/variogmultiv.Rd
adespatial/man/moran.bounds.Rd
adespatial/man/beta.div.comp.Rd
adespatial/man/chooseCN.Rd
adespatial/man/LCBD.comp.Rd
adespatial/man/trichoptera.Rd
adespatial/man/dist.ldc.Rd
adespatial/man/WRperiodogram.Rd
adespatial/man/mst.nb.Rd
adespatial/man/give.thresh.Rd
adespatial/man/scalogram.Rd