adespatial: Multivariate Multiscale Spatial Analysis

Tools for the multiscale spatial analysis of multivariate data. Several methods are based on the use of a spatial weighting matrix and its eigenvector decomposition (Moran's Eigenvectors Maps, MEM).

Install the latest version of this package by entering the following in R:
install.packages("adespatial")
AuthorSt├ęphane Dray, Guillaume Blanchet, Daniel Borcard, Guillaume Guenard, Thibaut Jombart, Guillaume Larocque, Pierre Legendre, Naima Madi, Helene H Wagner
Date of publication2017-03-24 12:07:21 UTC
MaintainerSt├ęphane Dray <stephane.dray@univ-lyon1.fr>
LicenseGPL (>= 2)
Version0.0-8

View on CRAN

Man pages

aem: Construct asymmetric eigenvector maps (AEM)

aem.build.binary: Construct a site-by-edge binary matrix

aem.time: AEM for time series

aem.weight.edges: Weight edges when constructing AEM variables

bacProdxy: Bacterial production data set

beta.div: Beta diversity computed as Var(Y)

beta.div.comp: Decompose D in replacement and richness difference components

chooseCN: Function to choose a connection network

Cperiodogram: Contingency periodogram

create.dbMEM.model: Combine dbMEM matrices corresponding to groups of sites

createlistw: Interactive tool to generate R code that creates a spatial...

dbmem: dbMEM spatial eigenfunctions

dist.ldc: Dissimilarity matrices for community composition data

forward.sel: Forward selection with multivariate Y using permutation under...

forward.sel.par: Parametric forward selection of explanatory variables in...

give.thresh: Compute the maximum distance of the minimum spanning tree...

global.rtest: Global and local tests

LCBD.comp: Compute LCBD from any D matrix

mastigouche: Mastigouche Lake network data set

mem: Function to compute and manage Moran's Eigenvector Maps (MEM)...

mfpa: Multi-frequential periodogram analysis

moran.bounds: Function to compute extreme values of Moran's I

moranNP.randtest: Function to compute positive and negative parts of Moran's...

moran.randtest: Function to compute Moran's index of spatial autocorrelation

mspa: Multi-Scale Pattern Analysis

msr: Moran spectral randomization

mst.nb: Function to compute neighborhood based on the minimum...

multispati: Multivariate spatial analysis

ortho.AIC: Compute AIC for models with orthonormal explanatory variables

orthobasis.poly: Function to compute polynomial of geographical coordinates

plot.orthobasisSp: Function to display Moran's Eigenvector Maps (MEM) and other...

rotation: Rotate a set of point by a certain angle

scalogram: Function to compute a scalogram

stimodels: Space-time interaction in ANOVA without replication

test.W: Function to compute and test eigenvectors of spatial...

trichoptera: Trichoptera data set

variogmultiv: Function to compute multivariate empirical variogram

WRperiodogram: Whittaker-Robinson periodogram

Functions

aem Man page
aem.build.binary Man page
aem.time Man page
aem.weight.edges Man page
aem.weight.time Man page
bacProdxy Man page
beta.div Man page
beta.div.comp Man page
chooseCN Man page
Cperiodogram Man page
create.dbMEM.model Man page
createlistw Man page
dbmem Man page
dist.ldc Man page
forward.sel Man page
forward.sel.par Man page
give.thresh Man page
global.rtest Man page
LCBD.comp Man page
local.rtest Man page
mastigouche Man page
mem Man page
mfpa Man page
moran.bounds Man page
moranNP.randtest Man page
moran.randtest Man page
mspa Man page
msr Man page
msr.default Man page
mst.nb Man page
multispati Man page
ortho.AIC Man page
orthobasis.listw Man page
orthobasis.poly Man page
[.orthobasisSp Man page
plot.mfpa Man page
plot.multispati Man page
plot.orthobasisSp Man page
plot.scalogram Man page
plot.WRperio Man page
print.mfpa Man page
print.mspa Man page
print.multispati Man page
quicksti Man page
rotation Man page
scalogram Man page
scatter.mspa Man page
scores.listw Man page
stimodels Man page
summary.multispati Man page
test.W Man page
trichoptera Man page
variogmultiv Man page
WRperiodogram Man page

Files

inst
inst/createlistw
inst/createlistw/www
inst/createlistw/www/style.css
inst/createlistw/app.R
inst/doc
inst/doc/tutorial.R
inst/doc/tutorial.html
inst/doc/tutorial.Rmd
src
src/Makevars
src/stipermute.c
src/forward.c
src/WRperiodogram.c
src/testsmoran.c
src/forward.h
src/buildbinary.c
src/WRperiodogram.h
src/init.c
src/betadiv.c
NAMESPACE
data
data/trichoptera.rda
data/bacProdxy.rda
data/mastigouche.rda
R
R/plot.orthobasisSp.R R/msr.R R/createlistw.R R/globloc.rtests.R R/scores.listw.R R/WRperiodogram.R R/stimodels.R R/aem.weight.time.R R/ortho.AIC.R R/mastigouche.R R/Cperiodogram.R R/dbmem.R R/variogmultiv.R R/forward.sel.R R/aem.R R/LCBD.comp.R R/dist.ldc.R R/trichoptera.R R/create.dbMEM.model.R R/aem.weight.edges.R R/beta.div.comp.R R/chooseCN.R R/test.W.R R/mspa.R R/orthobasis.poly.R R/beta.div.R R/moranNP.randtest.R R/forward.sel.par.R R/moran.randtest.R R/mfpa.R R/mst.nb.R R/scalogram.R R/give.thresh.R R/aem.build.binary.R R/rotation.R R/multispati.R R/bacProdxy.R R/aem.time.R R/utils-aem.R R/moran.bounds.R
vignettes
vignettes/createlistw.png
vignettes/adespatial.png
vignettes/tutorial.Rmd
vignettes/adespatial.bib
MD5
build
build/vignette.rds
DESCRIPTION
man
man/forward.sel.Rd man/dbmem.Rd man/beta.div.Rd man/mfpa.Rd man/createlistw.Rd man/global.rtest.Rd man/orthobasis.poly.Rd man/moran.randtest.Rd man/multispati.Rd man/msr.Rd man/aem.time.Rd man/Cperiodogram.Rd man/test.W.Rd man/bacProdxy.Rd man/plot.orthobasisSp.Rd man/aem.weight.edges.Rd man/moranNP.randtest.Rd man/stimodels.Rd man/mspa.Rd man/forward.sel.par.Rd man/ortho.AIC.Rd man/create.dbMEM.model.Rd man/mem.Rd man/variogmultiv.Rd man/aem.build.binary.Rd man/moran.bounds.Rd man/beta.div.comp.Rd man/aem.Rd man/chooseCN.Rd man/LCBD.comp.Rd man/trichoptera.Rd man/mastigouche.Rd man/dist.ldc.Rd man/WRperiodogram.Rd man/rotation.Rd man/mst.nb.Rd man/give.thresh.Rd man/scalogram.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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