adespatial: Multivariate Multiscale Spatial Analysis

Tools for the multiscale spatial analysis of multivariate data. Several methods are based on the use of a spatial weighting matrix and its eigenvector decomposition (Moran's Eigenvectors Maps, MEM).

AuthorSt├ęphane Dray, Guillaume Blanchet, Daniel Borcard, Guillaume Guenard, Thibaut Jombart, Guillaume Larocque, Pierre Legendre, Naima Madi, Helene H Wagner
Date of publication2016-12-13 19:53:41
MaintainerSt├ęphane Dray <stephane.dray@univ-lyon1.fr>
LicenseGPL (>= 2)
Version0.0-7

View on CRAN

Man pages

beta.div: Beta diversity computed as Var(Y)

beta.div.comp: Decompose D in replacement and richness difference components

chooseCN: Function to choose a connection network

Cperiodogram: Contingency periodogram

create.dbMEM.model: Combine dbMEM matrices corresponding to groups of sites

createlistw: Interactive tool to generate R code that creates a spatial...

dbmem: dbMEM spatial eigenfunctions

dist.ldc: Dissimilarity matrices for community composition data

forward.sel: Forward selection with multivariate Y using permutation under...

forward.sel.par: Parametric forward selection of explanatory variables in...

give.thresh: Compute the maximum distance of the minimum spanning tree...

global.rtest: Global and local tests

LCBD.comp: Compute LCBD from any D matrix

mem: Function to compute and manage Moran's Eigenvector Maps (MEM)...

mfpa: Multi-frequential periodogram analysis

moran.bounds: Function to compute extreme values of Moran's I

moranNP.randtest: Function to compute positive and negative parts of Moran's...

moran.randtest: Function to compute Moran's index of spatial autocorrelation

mspa: Multi-Scale Pattern Analysis

msr: Moran spectral randomization

mst.nb: Function to compute neighborhood based on the minimum...

multispati: Multivariate spatial analysis

ortho.AIC: Compute AIC for models with orthonormal explanatory variables

orthobasis.poly: Function to compute polynomial of geographical coordinates

plot.orthobasisSp: Function to display Moran's Eigenvector Maps (MEM) and other...

scalogram: Function to compute a scalogram

stimodels: Space-time interaction in ANOVA without replication

test.W: Function to compute and test eigenvectors of spatial...

trichoptera: Trichoptera data set

variogmultiv: Function to compute multivariate empirical variogram

WRperiodogram: Whittaker-Robinson periodogram

Files in this package

adespatial
adespatial/inst
adespatial/inst/createlistw
adespatial/inst/createlistw/www
adespatial/inst/createlistw/www/style.css
adespatial/inst/createlistw/app.R
adespatial/inst/doc
adespatial/inst/doc/tutorial.R
adespatial/inst/doc/tutorial.html
adespatial/inst/doc/tutorial.Rmd
adespatial/src
adespatial/src/Makevars
adespatial/src/forward.c
adespatial/src/WRperiodogram.c
adespatial/src/testsmoran.c
adespatial/src/forward.h
adespatial/src/WRperiodogram.h
adespatial/src/betadiv.c
adespatial/NAMESPACE
adespatial/data
adespatial/data/trichoptera.rda
adespatial/R
adespatial/R/plot.orthobasisSp.R adespatial/R/msr.R adespatial/R/createlistw.R adespatial/R/globloc.rtests.R adespatial/R/scores.listw.R adespatial/R/WRperiodogram.R adespatial/R/stimodels.R adespatial/R/ortho.AIC.R adespatial/R/Cperiodogram.R adespatial/R/dbmem.R adespatial/R/variogmultiv.R adespatial/R/forward.sel.R adespatial/R/LCBD.comp.R adespatial/R/dist.ldc.R adespatial/R/trichoptera.R adespatial/R/create.dbMEM.model.R adespatial/R/beta.div.comp.R adespatial/R/chooseCN.R adespatial/R/test.W.R adespatial/R/mspa.R adespatial/R/orthobasis.poly.R adespatial/R/beta.div.R adespatial/R/moranNP.randtest.R adespatial/R/forward.sel.par.R adespatial/R/moran.randtest.R adespatial/R/mfpa.R adespatial/R/mst.nb.R adespatial/R/scalogram.R adespatial/R/give.thresh.R adespatial/R/multispati.R adespatial/R/moran.bounds.R
adespatial/vignettes
adespatial/vignettes/createlistw.png
adespatial/vignettes/adespatial.png
adespatial/vignettes/tutorial.Rmd
adespatial/vignettes/adespatial.bib
adespatial/MD5
adespatial/build
adespatial/build/vignette.rds
adespatial/DESCRIPTION
adespatial/man
adespatial/man/forward.sel.Rd adespatial/man/dbmem.Rd adespatial/man/beta.div.Rd adespatial/man/mfpa.Rd adespatial/man/createlistw.Rd adespatial/man/global.rtest.Rd adespatial/man/orthobasis.poly.Rd adespatial/man/moran.randtest.Rd adespatial/man/multispati.Rd adespatial/man/msr.Rd adespatial/man/Cperiodogram.Rd adespatial/man/test.W.Rd adespatial/man/plot.orthobasisSp.Rd adespatial/man/moranNP.randtest.Rd adespatial/man/stimodels.Rd adespatial/man/mspa.Rd adespatial/man/forward.sel.par.Rd adespatial/man/ortho.AIC.Rd adespatial/man/create.dbMEM.model.Rd adespatial/man/mem.Rd adespatial/man/variogmultiv.Rd adespatial/man/moran.bounds.Rd adespatial/man/beta.div.comp.Rd adespatial/man/chooseCN.Rd adespatial/man/LCBD.comp.Rd adespatial/man/trichoptera.Rd adespatial/man/dist.ldc.Rd adespatial/man/WRperiodogram.Rd adespatial/man/mst.nb.Rd adespatial/man/give.thresh.Rd adespatial/man/scalogram.Rd

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