hcut: Cut tree of consensus

In agricolae: Statistical Procedures for Agricultural Research

Cut tree of consensus

Description

It shows dendrogram of a consensus of a tree generated by hclust.

Usage

hcut(consensus,h,group,col.text="blue",cex.text=1,...)

Arguments

consensus	object consensus
h	numeric scalar or vector with heights where the tree should be cut.
group	an integer scalar with the desired number of group
col.text	color of number consensus
cex.text	size of number consensus
...	Other parameters of the function plot() in cut()

Value

hcut Returns a data frame with group memberships and consensus tree.

Author(s)

F. de Mendiburu

See Also

hclust, consensus, hgroups

Examples

library(agricolae)
data(pamCIP)
# only code
rownames(pamCIP)<-substr(rownames(pamCIP),1,6)
# groups of clusters
# output<-consensus(pamCIP,nboot=100)
# hcut(output,h=0.4,group=5,main="Group 5")
# 
# hcut(output,h=0.4,group=8,type="t",edgePar=list(lty=1:2,col=2:1),main="group 8"
# ,col.text="blue",cex.text=1)

agricolae documentation built on Oct. 23, 2023, 1:06 a.m.