API for amt
Animal Movement Tools
| Global functions | |
|---|---|
| AIC.fit_clogit | Source code |
| Extract.uhc_data | Man page |
| NA_crs_ | Man page |
| Surv | Man page |
| [.uhc_data | Man page |
| `[.random_points` | Source code |
| `[.steps_xy` | Source code |
| `[.track_xy` | Source code |
| `[.track_xyt` | Source code |
| `[.uhc_data` | Source code |
| add_nsd | Man page Source code |
| add_nsd.steps_xy | Man page Source code |
| add_nsd.track_xy | Man page Source code |
| amt2ade | Source code |
| amt2bcpa | Source code |
| amt2crawl | Source code |
| amt2ctmm | Source code |
| amt2move | Source code |
| amt2movehmm | Source code |
| amt2trip | Source code |
| amt_fisher | Man page |
| amt_fisher_covar | Man page |
| append_x1 | Man page |
| arrange | Man page |
| arrange.random_points | Source code |
| arrange.random_steps | Source code |
| arrange.steps_xy | Source code |
| arrange.track_xy | Source code |
| arrange.track_xyt | Source code |
| as.data.frame.uhc_data | Man page Source code |
| as_degree | Man page Source code |
| as_ltraj | Man page Source code |
| as_ltraj.track_xy | Man page Source code |
| as_ltraj.track_xyt | Man page Source code |
| as_moveHMM | Man page Source code |
| as_moveHMM.track_xy | Man page Source code |
| as_rad | Man page Source code |
| as_sf | Man page Source code |
| as_sf.steps_xy | Man page Source code |
| as_sf.track_xy | Source code |
| as_sf_lines | Man page Source code |
| as_sf_lines.steps_xy | Source code |
| as_sf_lines.track_xy | Source code |
| as_sf_points | Man page Source code |
| as_sf_points.steps_xy | Man page Source code |
| as_sf_points.track_xy | Source code |
| as_sp | Man page Source code |
| as_telemetry | Man page Source code |
| as_telemetry.track_xyt | Man page Source code |
| as_track | Man page Source code |
| as_track.data.frame | Man page Source code |
| as_track.sfc_POINT | Man page Source code |
| as_track.steps_xyt | Man page Source code |
| available_distr | Man page Source code |
| bandwidth_pi | Man page |
| bandwidth_ref | Man page |
| bbox | Man page Source code |
| bbox.steps_xy | Man page Source code |
| bbox.track_xy | Man page Source code |
| bbox_base | Source code |
| boot1.fit_clogit | Man page |
| boot1.glm | Man page |
| bootstrap_logrss | Man page |
| bootstrap_logrss.fit_clogit | Man page |
| bootstrap_logrss.glm | Man page |
| calc_w | Man page Source code |
| calculate_sdr | Man page Source code |
| centroid | Man page Source code |
| centroid.track_xy | Man page Source code |
| check_factors | Man page |
| check_time_unit | Man page Source code |
| chull_mcp | Source code |
| clogit | Man page |
| coef.fit_clogit | Source code |
| coef.fit_logit | Source code |
| coercion | Man page |
| conf_envelope | Man page Source code |
| convert_angles | Man page |
| coords | Man page Source code |
| coords.track_xy | Source code |
| count.steps_xy | Source code |
| cum_dist | Man page Source code |
| cum_dist.track_xy | Source code |
| cum_ud | Man page |
| days | Man page |
| deer | Man page |
| diff | Man page |
| diff_dt | Source code |
| diff_x | Man page Source code |
| diff_x.track_xy | Source code |
| diff_y | Man page Source code |
| diff_y.track_xy | Source code |
| direction_abs | Man page Source code |
| direction_abs.track_xy | Man page Source code |
| direction_rel | Man page Source code |
| direction_rel.track_xy | Man page Source code |
| distance_with_diff | Source code |
| distinct | Man page |
| distinct.random_points | Source code |
| distr_name | Man page |
| distributions | Man page |
| extent | Man page |
| extent_both | Man page Source code |
| extent_both.track_xy | Source code |
| extent_max | Man page Source code |
| extent_max.track_xy | Source code |
| extent_x | Man page Source code |
| extent_x.track_xy | Source code |
| extent_y | Man page Source code |
| extent_y.track_xy | Source code |
| extract_covar_base | Source code |
| extract_covar_var_time_base | Source code |
| extract_covariates | Man page Source code |
| extract_covariates.random_points | Man page Source code |
| extract_covariates.steps_xy | Man page Source code |
| extract_covariates.track_xy | Man page Source code |
| extract_covariates_along | Man page Source code |
| extract_covariates_along.steps_xy | Man page Source code |
| extract_covariates_var_time | Man page Source code |
| extract_covariates_var_time.steps_xyt | Man page Source code |
| extract_covariates_var_time.track_xyt | Man page Source code |
| filter | Man page |
| filter.random_points | Source code |
| filter.random_steps | Source code |
| filter.steps_xy | Source code |
| filter.track_xy | Source code |
| filter.track_xyt | Source code |
| filter_min_n_burst | Man page Source code |
| filter_min_n_burst.track_xy | Man page Source code |
| filter_speed_base | Source code |
| fit_clogit | Man page Source code |
| fit_ctmm | Man page Source code |
| fit_distr | Man page Source code |
| fit_issf | Man page |
| fit_logit | Man page Source code |
| fit_rsf | Man page |
| fit_ssf | Man page |
| flag_defunct_clusters | Man page Source code |
| flag_defunct_clusters.track_xyt | Man page Source code |
| flag_duplicates | Man page Source code |
| flag_duplicates.track_xyt | Man page Source code |
| flag_fast_steps | Man page Source code |
| flag_fast_steps.track_xyt | Man page Source code |
| flag_roundtrips | Man page Source code |
| flag_roundtrips.track_xyt | Man page Source code |
| from | Man page Source code |
| from.track_xyt | Man page Source code |
| from_to | Man page Source code |
| from_to.track_xyt | Man page Source code |
| get_amt_fisher_covars | Man page Source code |
| get_cond_ud | Source code |
| get_crs | Man page Source code |
| get_crs.default | Source code |
| get_crs.hr | Source code |
| get_crs.steps_xy | Source code |
| get_crs.track_xy | Source code |
| get_displacement | Man page Source code |
| get_distr | Man page |
| get_max_dist | Man page Source code |
| get_max_dist.fit_clogit | Man page Source code |
| get_sh_forest | Man page Source code |
| group_by | Man page |
| group_by.random_steps | Source code |
| group_by.steps_xy | Source code |
| group_by.track_xy | Source code |
| group_by.track_xyt | Source code |
| has_crs | Man page Source code |
| has_crs.default | Source code |
| has_crs.hr | Source code |
| has_crs.steps_xy | Source code |
| has_crs.track_xy | Source code |
| hours | Man page |
| hr_akde | Man page Source code |
| hr_akde.track_xyt | Man page Source code |
| hr_area | Man page Source code |
| hr_area.RasterLayer | Man page Source code |
| hr_area.akde | Man page Source code |
| hr_area.hr | Man page Source code |
| hr_base | Source code |
| hr_base_ov | Source code |
| hr_cud | Man page |
| hr_cud.SpatRaster | Man page Source code |
| hr_cud.hr_prob | Source code |
| hr_feature | Source code |
| hr_isopleths | Man page |
| hr_isopleths.PackedSpatRaster | Man page |
| hr_isopleths.SpatRaster | Man page |
| hr_isopleths.akde | Man page Source code |
| hr_isopleths.hr_prob | Man page Source code |
| hr_isopleths.locoh | Man page |
| hr_isopleths.mcp | Man page |
| hr_kde | Man page Source code |
| hr_kde.track_xy | Man page Source code |
| hr_kde_lscv | Man page Source code |
| hr_kde_pi | Man page Source code |
| hr_kde_pi.track_xy | Man page Source code |
| hr_kde_ref | Man page Source code |
| hr_kde_ref.track_xy | Man page Source code |
| hr_kde_ref_scaled | Man page Source code Source code |
| hr_locoh | Man page Source code |
| hr_locoh.track_xy | Man page Source code |
| hr_mcp | Man page Source code |
| hr_mcp.track_xy | Source code |
| hr_od | Man page Source code |
| hr_od.track_xyt | Source code |
| hr_overlap | Man page |
| hr_overlap.hr | Man page Source code |
| hr_overlap.list | Man page Source code |
| hr_overlap_feature | Man page Source code |
| hr_overlaps | Man page |
| hr_to_sf | Man page Source code |
| hr_to_sf.list | Source code |
| hr_to_sf.tbl_df | Man page Source code |
| hr_ud | Man page Source code |
| hr_ud.hr_prob | Source code |
| hrest | Man page |
| inspect | Man page Source code |
| inspect.track_xy | Man page Source code |
| intensity_use | Man page Source code |
| intensity_use.track_xy | Source code |
| issf_drop_stratum | Man page Source code |
| issf_w_form | Man page Source code |
| kernel_setup | Source code |
| li | Source code |
| local_minima | Source code |
| log_rss | Man page Source code |
| log_rss.fit_clogit | Man page Source code |
| log_rss.glm | Man page Source code |
| lscv | Source code |
| make_distribution | Man page Source code |
| make_exp_distr | Man page Source code |
| make_gamma_distr | Man page Source code |
| make_hnorm_distr | Man page Source code |
| make_issf_model | Man page Source code |
| make_lnorm_distr | Man page Source code |
| make_start | Man page Source code |
| make_start.numeric | Man page Source code |
| make_start.steps_xyt | Man page Source code |
| make_start.track_xyt | Man page Source code |
| make_track | Man page |
| make_trast | Man page Source code |
| make_trast.track_xy | Man page Source code |
| make_unif_distr | Man page Source code |
| make_vonmises_distr | Man page Source code |
| map | Man page |
| map_int | Man page |
| minutes | Man page |
| mk_reg | Source code |
| mk_track | Man page Source code |
| movement_kernel1 | Source code |
| movement_metrics | Man page |
| msd | Man page Source code |
| msd.track_xy | Source code |
| msd_sf | Source code |
| mutate | Man page |
| mutate.steps_xy | Source code |
| mutate.track_xy | Source code |
| mutate.track_xyt | Source code |
| nest | Man page |
| nest.random_points | Source code |
| nest.random_steps | Source code |
| nest.steps_xy | Source code |
| nest.track_xy | Source code |
| normalize | Source code |
| nsd | Man page Source code |
| nsd.track_xy | Man page Source code |
| od | Man page Source code |
| od.track_xyt | Man page Source code |
| params | Man page |
| permute_steps | Source code |
| plot.hr | Man page Source code |
| plot.log_rss | Man page |
| plot.random_points | Source code |
| plot.random_steps | Source code |
| plot.track_xy | Source code |
| plot.uhc_data | Man page Source code |
| plot.uhc_envelopes | Man page Source code |
| plot_sl | Man page Source code |
| plot_sl.fit_clogit | Man page Source code |
| plot_sl.random_steps | Man page Source code |
| plot_sl_base | Source code |
| points.track_xy | Source code |
| prep_test_dat | Man page Source code |
| prep_test_dat.fit_clogit | Source code |
| prep_test_dat.glm | Source code |
| prep_uhc | Man page Source code |
| prep_uhc.fit_clogit | Man page Source code |
| prep_uhc.fit_logit | Man page Source code |
| prep_uhc.glm | Man page Source code |
| pull | Man page |
| random_numbers | Man page Source code |
| random_numbers.amt_distr | Source code |
| random_numbers.hnorm_distr | Source code |
| random_numbers.vonmises_distr | Source code |
| random_points | Man page Source code |
| random_points.default | Source code |
| random_points.hr | Man page Source code |
| random_points.sf | Man page Source code |
| random_points.track_xy | Man page Source code |
| random_points_base | Source code |
| random_steps | Man page Source code |
| random_steps.bursted_steps_xyt | Man page Source code |
| random_steps.numeric | Man page Source code |
| random_steps.steps_xy | Man page Source code |
| random_steps_simple | Man page Source code |
| range | Man page |
| range_both | Man page Source code |
| range_both.track_xy | Man page Source code |
| range_x | Man page Source code |
| range_x.track_xy | Man page Source code |
| range_y | Man page Source code |
| range_y.track_xy | Man page Source code |
| raster_to_terra | Source code |
| redistribution_kernel | Man page Source code |
| reexports | Man page |
| remove_capture | Man page |
| remove_capture_effect | Man page Source code |
| remove_capture_effect.track_xyt | Man page Source code |
| remove_incomplete_strata | Man page Source code |
| remove_incomplete_strata.random_steps | Man page Source code |
| rm_both | Source code |
| rolling_od | Man page Source code |
| rolling_od.track_xyt | Man page Source code |
| round_one | Source code |
| rp_transfer_attr | Source code |
| rsteps_transfer_attr | Source code |
| sampling_period | Man page Source code |
| screen_relocations | Source code |
| sdr | Man page Source code |
| sdr.track_xyt | Man page Source code |
| seconds | Man page |
| select | Man page |
| select.random_points | Source code |
| select.random_steps | Source code |
| select.steps_xy | Source code |
| select.track_xy | Source code |
| select.track_xyt | Source code |
| sh | Man page |
| sh_forest | Man page |
| simulate_path | Man page Source code |
| simulate_path.default | Man page Source code |
| simulate_path.redistribution_kernel | Man page Source code |
| sinuosity | Man page Source code |
| sinuosity.track_xy | Source code |
| site_fidelity | Man page Source code |
| site_fidelity.steps_xy | Man page Source code |
| sl_distr | Man page Source code |
| sl_distr.fit_clogit | Man page Source code |
| sl_distr.random_steps | Man page Source code |
| sl_distr_name | Man page Source code |
| sl_distr_name.fit_clogit | Man page Source code |
| sl_distr_name.random_steps | Man page Source code |
| sl_distr_params | Man page Source code |
| sl_distr_params.fit_clogit | Man page Source code |
| sl_distr_params.random_steps | Man page Source code |
| speed | Man page Source code |
| speed.track_xyt | Man page Source code |
| ssf_formula | Man page Source code |
| ssf_weights | Man page Source code |
| step_lengths | Man page Source code |
| step_lengths.track_xy | Man page Source code |
| step_lengths_sq | Source code |
| step_lengths_sq.track_xy | Source code |
| steps | Man page Source code |
| steps.track_xy | Man page Source code |
| steps.track_xyt | Man page Source code |
| steps_base | Source code |
| steps_by_burst | Man page Source code |
| steps_by_burst.track_xyt | Man page Source code |
| steps_transfer_attr | Source code |
| straightness | Man page Source code |
| straightness.track_xy | Source code |
| strata | Man page |
| summarise | Man page |
| summarise.random_points | Source code |
| summarise.random_steps | Source code |
| summarise.steps_xy | Source code |
| summarise.track_xy | Source code |
| summarise.track_xyt | Source code |
| summarize | Man page |
| summarize.random_points | Source code |
| summarize.random_steps | Source code |
| summarize.steps_xy | Source code |
| summarize.track_xy | Source code |
| summarize.track_xyt | Source code |
| summarize_sampling_rate | Man page Source code |
| summarize_sampling_rate.track_xyt | Man page Source code |
| summarize_sampling_rate_many | Man page Source code |
| summarize_sampling_rate_many.track_xyt | Man page Source code |
| summarize_sl | Man page Source code |
| summarize_speed | Man page Source code |
| summary.fit_clogit | Source code |
| summary.fit_logit | Source code |
| ta_distr | Man page Source code |
| ta_distr.fit_clogit | Man page Source code |
| ta_distr.random_steps | Man page Source code |
| ta_distr_name | Man page Source code Source code |
| ta_distr_name.fit_clogit | Man page Source code |
| ta_distr_name.random_steps | Man page Source code |
| ta_distr_params | Man page Source code |
| ta_distr_params.fit_clogit | Man page Source code |
| ta_distr_params.random_steps | Man page Source code |
| tac | Man page Source code |
| tac.track_xy | Source code |
| tibble | Man page |
| time_of_day | Man page Source code |
| time_of_day.steps_xyt | Man page Source code |
| time_of_day.track_xyt | Man page Source code |
| time_of_day_base | Source code |
| to | Man page Source code |
| to.track_xyt | Man page Source code |
| tot_dist | Man page Source code |
| tot_dist.track_xy | Source code |
| track | Man page Source code |
| track_immobile_base | Source code Source code |
| track_resample | Man page Source code |
| track_resample.track_xyt | Man page Source code |
| track_transfer_attr | Source code |
| tracked_from_to | Man page Source code |
| transform_coords | Man page Source code |
| transform_coords.track_xy | Man page Source code |
| transform_crs | Man page |
| trast | Man page |
| ua_distr | Man page Source code |
| uhc_hab | Man page |
| uhc_hsf_locs | Man page |
| uhc_issf_locs | Man page |
| ungroup | Man page |
| ungroup.track_xy | Source code |
| ungroup.track_xyt | Source code |
| unnest | Man page |
| unnest.nested_track | Source code |
| update_distr_man | Man page |
| update_exp | Man page Source code |
| update_gamma | Man page Source code |
| update_hnorm | Man page Source code |
| update_lnorm | Man page Source code |
| update_sl_distr | Man page Source code |
| update_ta_distr | Man page Source code |
| update_vonmises | Man page Source code |
| valid_distr | Source code |
| valid_distr_params | Source code |
| valid_sl_distr | Source code |
| valid_ta_distr | Source code |
| validate_coords | Source code |
| validate_coords.steps_xy | Source code |
| validate_coords.track_xy | Source code |
| validate_coords.track_xyt | Source code |
| validate_covars | Source code |
| vol_base | Source code |
| weeks | Man page |
| wrap_angle | Source code |
