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#######################################################################
##
## Function: anchors()
## Author : Jonathan Wand <wand(at)stanford.edu>
## http://wand.stanford.edu
## Created : 2008-04-20
##
## DESCRIPTION: Function for analyzing data with anchoring vignettes
##
## NOTES : Replaces separate functions chopit, anchors, vignette.order, etc
##
## OUTPUT: object of class anchors.$method (where $method is specified at input)
##
## INPUT:
## formula : a list of formula, e.g., list(self=...,vign=...,tau=...,)
## or a a single formula, e.g., self ~ vign1 + ... + vignJ
## data : matrix or dataframe
## method : type of analysis, choose one
## type : B or C for methods that use non-parametric ranks (rank, entropy)
## subset : (optional) logical statement based on variables in dataset
## na.action: usual usage
##
## MODIFIED:
##
#######################################################################
anchors <- function(formula, data,
method = c("B","C"),
options=anchors.options(),
subset,
combn = FALSE,
na.action = na.omit) {
## this allows user to use method=B or =C as shortcut
## instead of specifying two options: e.g., method='rank',type ='B'
method <- match.arg(method)
if (method %in% c("B","C")) {
type <- method
method <- "rank"
}
## Process data using anchors.data() via use of eval()
mf0 <- match.call(expand.dots = FALSE)
m <- match(c("formula","data", "subset",
"na.action","min.response"), names(mf0), 0)
mf0 <- mf0[c(1, m)]
mf0$method <- method
if (!is.null(options$na.response)) mf0$na.response <- options$na.response
if (!is.null(options$delete)) mf0$delete <- options$delete
if (!is.null(options$debug )) mf0$debug <- options$debug
if (is.matrix(eval(mf0$data, parent.frame()))) mf0$data <- as.data.frame(data)
mf0[[1]] <- as.name("anchors.data")
adata <- eval(mf0, parent.frame())
if (options$debug>0) cat("anchors.data(): complete\n")
## just build data
if (method=="data") return(adata)
## rank/non-parametric: B or C
obj <- anchors.rank(adata=adata, fdata=data, type=type, options=options)
## do combn (optional)
if (method == "rank" && combn == TRUE)
obj$combn <- anchors.combn( adata=adata, fdata=data, type=type, options=options)
return( obj )
}
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