API for annovarR
Integrated Framework to Annotate Genetic Variants
| Global functions | |
|---|---|
| after.query.steps | Source code |
| annotation | Man page Source code |
| annotation.auto | Source code |
| annotation.cols.match | Man page Source code |
| annotation.merge | Man page Source code |
| annotation.region.match | Man page Source code |
| annovar | Man page Source code |
| annovar.auto | Source code |
| annovarR | Man page |
| annovarR-package | Man page |
| before.query.steps | Source code |
| bioc.auto | Source code |
| connect.db | Source code |
| convert.1000g.name | Source code |
| database.dir.check | Source code |
| database.params.initial | Source code |
| db.file.prefix.initial | Source code |
| db.tb.colnames | Source code |
| db.type.check | Source code |
| dbname.initial | Source code |
| del | Man page Source code |
| disconnect.db | Source code |
| download.database | Man page Source code |
| drop.mysql.index | Man page Source code |
| drop.sqlite.index | Man page Source code |
| eval.parse.null | Source code |
| format.1000g.db.tb | Source code |
| format.cols | Source code |
| format.cols.plus.chr | Source code |
| format.db.region.tb | Source code |
| format.db.tb | Source code |
| format.db.tb.unique | Source code |
| full.foverlaps | Source code |
| get.annotation.dbtype | Man page Source code |
| get.annotation.func | Source code |
| get.annotation.names | Man page Source code |
| get.annotation.needcols | Man page Source code |
| get.cfg.value.by.name | Source code |
| get.download.name | Man page Source code |
| get.finished.filename | Source code |
| get.full.match.final.table | Source code |
| get.region.match.final.table | Source code |
| info.msg | Source code |
| input.dat.check | Source code |
| input.dat.initial | Source code |
| mysql.auto.build | Man page Source code |
| mysql.auto.index | Man page Source code |
| mysql.build | Man page Source code |
| mysql.head | Man page Source code |
| mysql.index | Man page Source code |
| mysql.tb.colnames | Man page Source code |
| mysql.tb.indexes | Man page Source code |
| onAttach | Source code |
| print.db.info | Source code |
| print.vb | Source code |
| return.empty.col | Source code |
| select.dat.full.match | Source code |
| select.dat.full.match.mysql | Source code |
| select.dat.full.match.sqlite | Source code |
| select.dat.full.match.txt | Source code |
| select.dat.region.match | Source code |
| select.dat.region.match.sqlite | Source code |
| select.dat.region.match.txt | Source code |
| set.1000g.db | Source code |
| set.1000g.table | Source code |
| set.db | Source code |
| set.db.hgnc.alias | Source code |
| set.db.refgene | Source code |
| set.db.rs2pos | Source code |
| set.db.sync.version | Source code |
| set.db.tolower | Source code |
| set.db.toupper | Source code |
| set.sih.normal.pool.db | Source code |
| set.table | Source code |
| set.table.hgnc.alias | Source code |
| set.table.refgene | Source code |
| set.table.rs2pos | Source code |
| set.table.sync.version | Source code |
| set.table.tolower | Source code |
| set.table.toupper | Source code |
| sql2sqlite | Man page Source code |
| sqlite.auto.build | Man page Source code |
| sqlite.auto.index | Man page Source code |
| sqlite.build | Man page Source code |
| sqlite.head | Man page Source code |
| sqlite.index | Man page Source code |
| sqlite.tb.colnames | Man page Source code |
| sqlite.tb.indexes | Man page Source code |
| sqlite2sql | Man page Source code |
| sync.colnames | Source code |
| table.name.initial | Source code |
| vcfanno | Man page Source code |
| vcfanno.auto | Source code |
| vep | Man page Source code |
| vep.auto | Source code |
