annovarR
Integrated Framework to Annotate Genetic Variants

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Integrated Framework to Annotate Genetic Variants

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NAMESPACE
NEWS.md
DESCRIPTION
LICENSE
man/sqlite.head.Rd man/annovarR.Rd man/mysql.tb.colnames.Rd man/sqlite.index.Rd man/sqlite.tb.indexes.Rd man/sqlite.auto.build.Rd man/mysql.auto.index.Rd man/get.annotation.dbtype.Rd man/mysql.index.Rd man/mysql.head.Rd man/annotation.merge.Rd man/sqlite2sql.Rd man/sqlite.build.Rd man/get.annotation.names.Rd man/vcfanno.Rd man/download.database.Rd man/annovar.Rd man/sqlite.auto.index.Rd man/mysql.auto.build.Rd man/mysql.tb.indexes.Rd man/del.Rd man/sql2sqlite.Rd man/get.annotation.needcols.Rd man/drop.mysql.index.Rd man/sqlite.tb.colnames.Rd man/drop.sqlite.index.Rd man/mysql.build.Rd man/annotation.Rd man/get.download.name.Rd man/vep.Rd man/annotation.cols.match.Rd man/annotation.region.match.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test_get.R tests/testthat/test_external_function.R tests/testthat/test_annovar.R tests/testthat/test_annotation.reduce.R tests/testthat/test_external_tools.R tests/testthat/test_build.R tests/testthat/test_auto.R tests/testthat/test_custom.R tests/testthat/test_download.R tests/testthat/test_utils.R tests/testthat/test_annotation.utils.R tests/testthat/avoid_32_error/test_region.R tests/testthat/redundent/test_annotation.R vignettes/introduction_to_annovarR.Rmd vignettes/databases_in_annovarR.Rmd R/utils.R R/annovarR.R R/build.R R/annotation.utils.R R/convert.R R/annotation.R R/annotation.utils.initial.R R/auto.R R/download.R R/external_function.R R/external_tools.R R/get.R
inst/extdata/config/databases.toml
inst/extdata/demo/hg19_REDIportal.txt
inst/extdata/demo/hg19_intervar_20170202.sqlite.sql
inst/extdata/demo/hg19_ALL.sites.2015_08.sqlite.sql
inst/extdata/demo/hg19_gnomad_genome.txt
inst/extdata/demo/hg19_normal2016sih_wes_tall.txt
inst/extdata/demo/hg19_cosmic81.sqlite.sql
inst/extdata/demo/hg19_gnomad_exome.txt
inst/extdata/demo/LoFtool_scores.txt
inst/extdata/demo/hg19_exac03.txt
inst/extdata/demo/example.gff2
inst/extdata/demo/GDI_full_10282015.txt
inst/extdata/demo/RVIS_ExAC_4KW.txt
inst/extdata/demo/hg19_avsnp147.common.txt
inst/extdata/demo/hg19_caddgt10.txt
inst/extdata/demo/hg19_epi_genes_v1.txt
inst/extdata/demo/hg19_dbnsfp30a.txt
inst/extdata/demo/hg19_hgnc_coding.txt
inst/extdata/demo/hg19_normal2016sih_wes_nkt.txt
inst/extdata/demo/RADAR2.R
inst/extdata/demo/hg19_nci60.txt
inst/extdata/demo/hg38_tmcsnpdb.txt
inst/extdata/demo/hg19_popfreq_max_20150413.txt
inst/extdata/demo/DARNED.R
inst/extdata/demo/example.vcf
inst/extdata/demo/hg19_normal2016sih_wgs_dlbcl.txt
inst/extdata/demo/hg19_icgc21.txt
inst/extdata/demo/hg19_exac03nonpsych.txt
inst/extdata/demo/hg19_avsnp147.txt
inst/extdata/demo/hg19_gme.txt
inst/extdata/demo/hg19_gwava.txt
inst/extdata/demo/hg19_popfreq_all_20150413.txt
inst/extdata/demo/example.gff3
inst/extdata/demo/hg19_eigen.txt
inst/extdata/demo/hg19_RADAR2.sqlite.sql
inst/extdata/demo/hg19_DARNED.txt
inst/extdata/demo/hg19_exac03nontcga.txt
inst/extdata/demo/hg19_cscd_common_circrna.txt
inst/extdata/demo/hg19_varcards.txt
inst/extdata/demo/hg19_caddgt20.txt
inst/extdata/demo/hg19_dbnsfp31a_interpro.txt
inst/extdata/demo/clinvar.R
inst/extdata/demo/hg19_cscd_cancer_circrna.txt
inst/extdata/demo/sqlite.dat.txt
inst/extdata/demo/hg19_refGene.txt
inst/extdata/demo/hg19_hrcr1.txt
inst/extdata/demo/hg19_kaviar_20150923.txt
inst/extdata/demo/interval.R
inst/extdata/demo/hg19_intervar_20170202.txt
inst/extdata/demo/hg19_normal2016sih_wes_ball.txt
inst/extdata/demo/hg19_cosmic81.txt
inst/extdata/demo/hg19_mcap.txt
inst/extdata/demo/hg19_clinvar_20170130.txt
inst/extdata/demo/hg19_DARNED.sqlite.sql
inst/extdata/demo/example.bed
inst/extdata/demo/hg19_clinvar_20170130.sqlite.sql
inst/extdata/demo/hg19_ALL.sites.2015_08.txt
inst/extdata/demo/hg19_RADAR2.txt
inst/extdata/demo/hg19_normal2016sih_wgs_nkt.txt
inst/extdata/demo/hg19_avsnp147.sqlite.sql
inst/extdata/demo/hg19_dbnsfp33a.txt
inst/extdata/demo/demo.cfg
inst/extdata/demo/hg19_revel.txt
inst/extdata/demo/hg19_cscd_normal_circrna.txt
inst/extdata/demo/sqlite/hg19_hrcr1.sqlite
inst/extdata/demo/sqlite/hg19_normal2016sih_wes_ball.sqlite
inst/extdata/demo/sqlite/hg19_DARNED.sqlite
inst/extdata/demo/sqlite/hg19_dbnsfp33a.sqlite
inst/extdata/demo/sqlite/hg19_nci60.sqlite
inst/extdata/demo/sqlite/hg19_gme.sqlite
inst/extdata/demo/sqlite/hg19_normal2016sih_wgs_nkt.sqlite
inst/extdata/demo/sqlite/hg19_kaviar_20150923.sqlite
inst/extdata/demo/sqlite/hg19_icgc21.sqlite
inst/extdata/demo/sqlite/hg19_caddgt10.sqlite
inst/extdata/demo/sqlite/hg19_gnomad_genome.sqlite
inst/extdata/demo/sqlite/hg19_revel.sqlite
inst/extdata/demo/sqlite/hg19_normal2016sih_wes_nkt.sqlite
inst/extdata/demo/sqlite/hg19_avsnp147.sqlite
inst/extdata/demo/sqlite/hg19_ALL.sites.2015_08.sqlite
inst/extdata/demo/sqlite/hg19_RADAR2.sqlite
inst/extdata/demo/sqlite/hg19_exac03.sqlite
inst/extdata/demo/sqlite/hg19_dbnsfp30a.sqlite
inst/extdata/demo/sqlite/hg19_cosmic81.sqlite
inst/extdata/demo/sqlite/hg19_popfreq_all_20150413.sqlite
inst/extdata/demo/sqlite/hg19_gwava.sqlite
inst/extdata/demo/sqlite/hg19_clinvar_20170130.sqlite
inst/extdata/demo/sqlite/hg19_normal2016sih_wes_tall.sqlite
inst/extdata/demo/sqlite/hg19_REDIportal.sqlite
inst/extdata/demo/sqlite/hg19_normal2016sih_wgs_dlbcl.sqlite
inst/extdata/demo/sqlite/hg19_popfreq_max_20150413.sqlite
inst/extdata/demo/sqlite/hg19_mcap.sqlite
inst/extdata/demo/sqlite/hg19_dbnsfp31a_interpro.sqlite
inst/extdata/demo/sqlite/hg19_intervar_20170202.sqlite
inst/extdata/demo/sqlite/hg19_exac03nontcga.sqlite
inst/extdata/demo/sqlite/hg19_exac03nonpsych.sqlite
inst/extdata/demo/sqlite/hg19_gnomad_exome.sqlite
inst/extdata/demo/sqlite/hg19_caddgt20.sqlite
inst/extdata/demo/sqlite/hg19_avsnp147.common.sqlite
inst/extdata/demo/sqlite/hg19_eigen.sqlite
inst/extdata/demo/vcfanno_demo/custom.lua
inst/extdata/demo/vcfanno_demo/exac.vcf.gz
inst/extdata/demo/vcfanno_demo/fitcons.bed.gz
inst/extdata/demo/vcfanno_demo/gnomad.conf
inst/extdata/demo/vcfanno_demo/query.vcf.gz
inst/extdata/demo/vcfanno_demo/rare-disease.conf
inst/extdata/demo/vcfanno_demo/rare-disease.lua
inst/extdata/demo/vcfanno_demo/exac.vcf.gz.tbi
inst/extdata/demo/vcfanno_demo/gem.conf
inst/extdata/demo/vcfanno_demo/ex.bam.bai
inst/extdata/demo/vcfanno_demo/ex.bam
inst/extdata/demo/vcfanno_demo/conf.toml
inst/extdata/demo/vcfanno_demo/fitcons.bed.gz.tbi
inst/doc/introduction_to_annovarR.R inst/doc/databases_in_annovarR.Rmd inst/doc/introduction_to_annovarR.Rmd
inst/doc/databases_in_annovarR.html
inst/doc/introduction_to_annovarR.html
inst/doc/databases_in_annovarR.R
annovarR documentation built on Jan. 9, 2018, 5:05 p.m.

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