ape-package: Analyses of Phylogenetics and Evolution
In ape: Analyses of Phylogenetics and Evolution
ape-package R Documentation
Analyses of Phylogenetics and Evolution
Description
ape provides functions for reading, writing, manipulating,
analysing, and simulating phylogenetic trees and DNA sequences,
computing DNA distances, translating into AA sequences, estimating
trees with distance-based methods, and a range of methods for
comparative analyses and analysis of diversification. Functionalities
are also provided for programming new phylogenetic methods.
The complete list of functions can be displayed with
library(help = ape).
More information on ape can be found at
https://emmanuelparadis.github.io.
Author(s)
Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard
Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel, Christoph
Heibl, Daniel Lawson, Vincent Lefort, Pierre Legendre, Jim Lemon,
Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Andrei-Alin
Popescu, Klaus Schliep, Korbinian Strimmer, Damien de Vienne
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
References
Paradis, E. (2012) Analysis of Phylogenetics and Evolution with
R (Second Edition). New York: Springer.
Paradis, E., Claude, J. and Strimmer, K. (2004) APE: analyses of
phylogenetics and evolution in R language. Bioinformatics,
20, 289–290.
Popescu, A.-A., Huber, K. T. and Paradis, E. (2012) ape 3.0: new tools
for distance based phylogenetics and evolutionary analysis in
R. Bioinformatics, 28, 1536–1537.
Paradis, E. and Schliep, K. (2019) ape 5.0: an environment for modern
phylogenetics and evolutionary analyses in R. Bioinformatics,
35, 526–528.
ape documentation built on May 29, 2024, 10:50 a.m.
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| ape-package | R Documentation |
Analyses of Phylogenetics and Evolution
Description
ape provides functions for reading, writing, manipulating, analysing, and simulating phylogenetic trees and DNA sequences, computing DNA distances, translating into AA sequences, estimating trees with distance-based methods, and a range of methods for comparative analyses and analysis of diversification. Functionalities are also provided for programming new phylogenetic methods.
The complete list of functions can be displayed with
library(help = ape).
More information on ape can be found at https://emmanuelparadis.github.io.
Author(s)
Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel, Christoph Heibl, Daniel Lawson, Vincent Lefort, Pierre Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Andrei-Alin Popescu, Klaus Schliep, Korbinian Strimmer, Damien de Vienne
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
References
Paradis, E. (2012) Analysis of Phylogenetics and Evolution with R (Second Edition). New York: Springer.
Paradis, E., Claude, J. and Strimmer, K. (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289–290.
Popescu, A.-A., Huber, K. T. and Paradis, E. (2012) ape 3.0: new tools for distance based phylogenetics and evolutionary analysis in R. Bioinformatics, 28, 1536–1537.
Paradis, E. and Schliep, K. (2019) ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R. Bioinformatics, 35, 526–528.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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