These functions help to find files on the local disk.
Xplorefiles(from = "HOME", recursive = TRUE, ignore.case = TRUE) editFileExtensions() bydir(x) Xplor(from = "HOME")
the directory where to start the file search; by default,
the ‘HOME’ directory. Use
whether to search the subdirectories;
whether to ignore the case of the file extensions;
a list returned by
Xplorefiles looks for all files with a specified extension in
their names. The default is to look for the following file types:
CLUSTAL (.aln), FASTA (.fas, .fasta), FASTQ (.fq, .fastq), NEWICK
(.nwk, .newick, .tre, .tree), NEXUS (.nex, .nexus), and PHYLIP
(.phy). This list can be modified with
bydir sorts the list of files by directories.
Xplor combines the other operations and opens the results in
a Web browser with clickable links to the directories and files.
Xplorefiles returns a list.
bydir prints the file
listings on the console.
## Not run: x <- Xplorefiles() x # all data files on your disk bydir(x) # sorted by directories bydir(x["fasta"]) # only the FASTA files Xplorefiles(getwd(), recursive = FALSE) # look only in current dir Xplor() ## End(Not run)
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