AlleleSummation: The AlleleSummation class

Description Usage Arguments Fields and Methods Author(s)

Description

Package: aroma.affymetrix
Class AlleleSummation

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--Model
~~~~~~~~~~~~|
~~~~~~~~~~~~+--UnitModel
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--AlleleSummation

Directly known subclasses:

public abstract static class AlleleSummation
extends UnitModel

This class takes allele-specific chip effect estimates of a SnpChipEffectSet and returns a CnChipEffectSet holding the summed allele estimates.

Usage

1
AlleleSummation(dataSet=NULL, ignoreNAs=TRUE, ...)

Arguments

dataSet

A SnpChipEffectSet.

ignoreNAs

If TRUE, missing values are excluded when summing the signals from the two alleles.

...

Arguments passed to UnitModel.

Fields and Methods

Methods:

findUnitsTodo -
getChipEffectSet -
process -

Methods inherited from UnitModel:
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction, getParameters

Methods inherited from Model:
as.character, fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis

Author(s)

Henrik Bengtsson



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