AlleleSummation: The AlleleSummation class

Description Usage Arguments Fields and Methods Author(s)


Package: aroma.affymetrix
Class AlleleSummation


Directly known subclasses:

public abstract static class AlleleSummation
extends UnitModel

This class takes allele-specific chip effect estimates of a SnpChipEffectSet and returns a CnChipEffectSet holding the summed allele estimates.


AlleleSummation(dataSet=NULL, ignoreNAs=TRUE, ...)



A SnpChipEffectSet.


If TRUE, missing values are excluded when summing the signals from the two alleles.


Arguments passed to UnitModel.

Fields and Methods


findUnitsTodo -
getChipEffectSet -
process -

Methods inherited from UnitModel:
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction, getParameters

Methods inherited from Model:
as.character, fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis


Henrik Bengtsson

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