aroma.affymetrix-package: Package aroma.affymetrix
In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets
aroma.affymetrix-package R Documentation
Package aroma.affymetrix
Description
A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system. The only parameter that limits the number of chips that can be processed is the amount of available disk space. The Aroma Framework has successfully been used in studies to process tens of thousands of arrays. This package has actively been used since 2006.
Installation and updates
The preferred way to install this package is:
source("https://callr.org/install#aroma.affymetrix")
To get started
To get started, see the online user guides and the vignettes
https://www.aroma-project.org/.
How to cite this package
In order to keep improving and providing support for this project,
please cite references [1], [2], or any applicable publication listed on
https://aroma-project.org/publications/, whenever you publish
work that have been used any of the Aroma Framework.
License
The releases of this package is licensed under
LGPL version 2.1 or newer.
The development code of the packages is under a private license
(where applicable) and patches sent to the author fall under the
latter license, but will be, if incorporated, released under the
"release" license above.
Author(s)
Henrik Bengtsson, James Bullard, Kasper Hansen, Pierre Neuvial, Elizabeth Purdom, Mark Robinson, Ken Simpson
References
[1] H. Bengtsson, K. Simpson, J. Bullard, and K. Hansen, aroma.affymetrix: A generic framework in R for analyzing small to very large Affymetrix data sets in bounded memory, Tech Report #745, Department of Statistics, University of California, Berkeley, February 2008.
[2] H. Bengtsson, R. Irizarry, B. Carvalho, and T. Speed, Estimation and assessment of raw copy numbers at the single locus level, Bioinformatics, 2008.
[3] H. Bengtsson, The R.oo package - Object-Oriented Programming with References Using Standard R Code, In Kurt Hornik, Friedrich Leisch and Achim Zeileis, editors, Proceedings of the 3rd International Workshop on Distributed Statistical Computing (DSC 2003), March 20-22, Vienna, Austria. https://www.r-project.org/conferences/DSC-2003/Proceedings/
For a complete list, see https://aroma-project.org/publications/.
aroma.affymetrix documentation built on May 29, 2024, 4:32 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| aroma.affymetrix-package | R Documentation |
Package aroma.affymetrix
Description
A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system. The only parameter that limits the number of chips that can be processed is the amount of available disk space. The Aroma Framework has successfully been used in studies to process tens of thousands of arrays. This package has actively been used since 2006.
Installation and updates
The preferred way to install this package is:
source("https://callr.org/install#aroma.affymetrix")
To get started
To get started, see the online user guides and the vignettes https://www.aroma-project.org/.
How to cite this package
In order to keep improving and providing support for this project, please cite references [1], [2], or any applicable publication listed on https://aroma-project.org/publications/, whenever you publish work that have been used any of the Aroma Framework.
License
The releases of this package is licensed under LGPL version 2.1 or newer.
The development code of the packages is under a private license (where applicable) and patches sent to the author fall under the latter license, but will be, if incorporated, released under the "release" license above.
Author(s)
Henrik Bengtsson, James Bullard, Kasper Hansen, Pierre Neuvial, Elizabeth Purdom, Mark Robinson, Ken Simpson
References
[1] H. Bengtsson, K. Simpson, J. Bullard, and K. Hansen, aroma.affymetrix: A generic framework in R for analyzing small to very large Affymetrix data sets in bounded memory, Tech Report #745, Department of Statistics, University of California, Berkeley, February 2008.
[2] H. Bengtsson, R. Irizarry, B. Carvalho, and T. Speed, Estimation and assessment of raw copy numbers at the single locus level, Bioinformatics, 2008.
[3] H. Bengtsson, The R.oo package - Object-Oriented Programming with References Using Standard R Code, In Kurt Hornik, Friedrich Leisch and Achim Zeileis, editors, Proceedings of the 3rd International Workshop on Distributed Statistical Computing (DSC 2003), March 20-22, Vienna, Austria. https://www.r-project.org/conferences/DSC-2003/Proceedings/
For a complete list, see https://aroma-project.org/publications/.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.