BackgroundCorrection: The BackgroundCorrection class
In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

BackgroundCorrection

R Documentation

The BackgroundCorrection class

Description

Package: aroma.affymetrix
Class BackgroundCorrection

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--Transform
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--ProbeLevelTransform
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--BackgroundCorrection

Directly known subclasses:
GcRmaBackgroundCorrection, LimmaBackgroundCorrection, NormExpBackgroundCorrection, OpticalBackgroundCorrection, RmaBackgroundCorrection

public abstract static class BackgroundCorrection
extends ProbeLevelTransform

This class represents a background adjustment function.

Usage

BackgroundCorrection(..., subsetToUpdate=NULL, typesToUpdate=NULL)

Arguments

`...`	Arguments passed to the constructor of `ProbeLevelTransform`.
`subsetToUpdate`	The probes to be updated. If `NULL`, all probes are updated.
`typesToUpdate`	Types of probes to be updated.

Fields and Methods

Methods:

	`process`	-

Methods inherited from ProbeLevelTransform:
getRootPath

Methods inherited from Transform:
getOutputDataSet, getOutputFiles

Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis