Man pages for assignPOP
Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework
| accuracy.kfold | Estimate assignment accuracies of K-fold cross-validation... |
| accuracy.MC | Estimate assignment accuracies of Monte-Carlo... |
| accuracy.plot | Make a boxplot (ggplot2 style) of assignment accuracy from... |
| assign.kfold | Population assignment test using K-fold cross-validation |
| assign.matrix | Make an assignment maxtrix from cross-validation results |
| assign.MC | Population assignment test using Monte-Carlo cross-validation |
| assign.X | Perform a population assignment test on unknown individuals... |
| check.loci | Check which loci frequently have high Fst across training... |
| compile.data | Compile genetic and other non-genetic data |
| membership.plot | Make a membership probability plot using results from K-fold... |
| read.Genepop | Read GENEPOP format file |
| read.Structure | Read Structure format file |
| reduce.allele | Remove low variance alleles (dimensionality reduction) |
