read.Genepop: Read GENEPOP format file

In assignPOP: Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework

Description

This function allows you to import a GENEPOP format file into R. Population names can be specified in the argument. See http://genepop.curtin.edu.au/help_input.html for details about GENEPOP format.

Usage

read.Genepop(x, pop.names = NULL, haploid = FALSE, pos = 1)

Arguments

x	GENEPOP file or path to the file. The filename extension (e.g., .txt) should be included.
pop.names	A character string vector for population names. The order of the name should be the same with the order (top to down) in your GENEPOP file.
haploid	A logical variable (TRUE or FALSE) to specify whether your dataset is haploid data. Default is FALSE.
pos	A parameter for program development use; users can ignore it.

Value

This function returns a list comprising three elements. 1. YOU_NAME_IT$DataMatrix: A matrix of genetic data with a population name label ($popNameVector) in the last column. 2. YOU_NAME_IT$SampleID: A vector of sample ID. 3. YOU_NAME_IT$LocusName: A vector of locus name.

References

Rousset, F. 2008. Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol. Ecol. Resources 8: 103-106

Examples

# infile <- read.Genepop("Your_Genepop_File.txt", pop.names=c("pop_A", "pop_B", "pop_C"))

Example output

assignPOP documentation built on Oct. 28, 2021, 1:06 a.m.