backbone.suggest suggests and optionally runs an appropriate backbone model for a graph object.
backbone.suggest(G, s = NULL)
graph: A graph represented in an object of class matrix, sparse
numeric: If provided, a backbone is extracted using this value as the significance level or sparsification parameter.
s == NULL: NULL, but a message is displayed with a suggested model.
If 0 <=
s <= 1: A binary backbone graph in the same class as
G, obtained by extracting the backbone
s significance level (if a statistical model is suggested) or using sparisfication parameter
(if a sparsification model is suggested). The code used to perform the extraction, and suggested manuscript
text are displayed.
Neal, Z. P. (2022). backbone: An R Package to Extract Network Backbones. PLOS ONE, 17, e0269137. doi: 10.1371/journal.pone.0269137
M <- matrix(runif(100),10,10) #A random weighted, directed graph backbone <- backbone.suggest(M) backbone <- backbone.suggest(M, s = 0.05)
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