View source: R/backbone.suggest.R

backbone.suggest | R Documentation |

`backbone.suggest`

suggests and optionally runs an appropriate backbone model for a graph object.

backbone.suggest(G, s = NULL)

`G` |
graph: A graph represented in an object of class matrix, sparse |

`s` |
numeric: If provided, a backbone is extracted using this value as the significance level or sparsification parameter. |

If `s`

== NULL: NULL, but a message is displayed with a suggested model.
If 0 <= `s`

<= 1: A binary backbone graph in the same class as `G`

, obtained by extracting the backbone
at the `s`

significance level (if a statistical model is suggested) or using sparisfication parameter `s`

(if a sparsification model is suggested). The code used to perform the extraction, and suggested manuscript
text are displayed.

Neal, Z. P. (2022). backbone: An R Package to Extract Network Backbones. *PLOS ONE, 17*, e0269137. doi: 10.1371/journal.pone.0269137

M <- matrix(runif(100),10,10) #A random weighted, directed graph backbone <- backbone.suggest(M) backbone <- backbone.suggest(M, s = 0.05)

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