trials.needed: Estimate number of monte carlo trials needed to estimate...

In backbone: Extracts the Backbone from Graphs

Estimate number of monte carlo trials needed to estimate p-value

Description

trials.needed estimates the number of monte carlo trials needed to estimate edgewise p-values

Usage

trials.needed(M, alpha, signed, missing.as.zero, mtc, how.close = 0.95)

Arguments

M	matrix: An adjacency matrix representing a network from which a backbone is is being extracted
alpha	real: significance level of hypothesis test(s)
signed	boolean: TRUE for a signed backbone, FALSE for a binary backbone
missing.as.zero	boolean: should missing edges be treated as edges with zero weight and tested for significance
mtc	string: type of Multiple Test Correction to be applied; can be any method allowed by p.adjust.
how.close	real: How close can the empirical p-value be to alpha and still be distinguishable, expressed as a proportion

Value

integer

backbone documentation built on May 29, 2024, 8:03 a.m.