API for bayou
Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
| Global functions | |
|---|---|
| Lposterior | Man page |
| OU.lik | Man page |
| OU.repar | Man page |
| OUphenogram | Man page |
| OUwie2bayou | Man page |
| QG.alpha | Man page |
| QG.sig2 | Man page |
| bayou | Man page |
| bayou-deprecated | Man page Man page |
| bayou-package | Man page |
| bayou.checkModel | Man page |
| bayou.lik | Man page |
| bayou.makeMCMC | Man page |
| bayou.mcmc | Man page |
| bayou2OUwie | Man page |
| cdpois | Man page |
| combine.chains | Man page |
| dataSim | Man page |
| dhalfcauchy | Man page |
| dloc | Man page |
| dsb | Man page |
| gelman.R | Man page |
| identifyBranches | Man page |
| load.bayou | Man page |
| make.powerposteriorFn | Man page |
| make.prior | Man page |
| make.refFn | Man page |
| makeBayouModel | Man page |
| makeTransparent | Man page |
| model.OU | Man page |
| parmap.W | Man page |
| pars2simmap | Man page |
| phalfcauchy | Man page |
| phenogram.density | Man page |
| plot.bayouMCMC | Man page |
| plot.ssMCMC | Man page |
| plotBayoupars | Man page |
| plotBranchHeatMap | Man page |
| plotOUtreesim | Man page |
| plotRegimes | Man page |
| plotShiftSummaries | Man page |
| plotSimmap.mcmc | Man page |
| print.bayouFit | Man page |
| print.bayouMCMC | Man page |
| print.priorFn | Man page |
| print.refFn | Man page |
| print.ssMCMC | Man page |
| priorSim | Man page |
| pull.pars | Man page |
| qhalfcauchy | Man page |
| rdpois | Man page |
| regime.plot | Man page |
| rhalfcauchy | Man page |
| rloc | Man page |
| rsb | Man page |
| set.burnin | Man page |
| shiftSummaries | Man page |
| simmap.W | Man page |
| steppingstone | Man page |
| summary.bayouMCMC | Man page |
