Files in bayou
Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
MD5
DESCRIPTION
NAMESPACE
inst/tests/test-data_load.r
inst/tests/test-prior.r
inst/tests/test-likelihood.r
inst/tests/test-weight_matrix.r
R/bayou-moves.R
R/bayou-package.R
R/bayou-models.R
R/bayou-mcmc-utilities.R
R/bayou-utilities.R
R/bayou-plotting.R
R/RcppExports.R
R/probability.R
R/bayou-custommodel-input.R
R/teaching-functions.R
R/bayou-weight_matrix.R
R/bayou-simulation.r
R/bayou-mcmc.R
R/conversion-utilities.R
R/bayou-prior.R
R/bayou-likelihood.R
R/bayou-deprecated.R
R/bayou-steppingstone.R
src/Makevars.win
src/branches.cpp
src/RcppExports.cpp
src/threepoint.cpp
src/weightmatrix.cpp
man/QG.alpha.Rd
man/plotBayoupars.Rd
man/gelman.R.Rd
man/dhalfcauchy.Rd
man/makeBayouModel.Rd
man/print.bayouFit.Rd
man/parmap.W.Rd
man/make.powerposteriorFn.Rd
man/Lposterior.Rd
man/print.priorFn.Rd
man/make.prior.Rd
man/summary.bayouMCMC.Rd
man/OUphenogram.Rd
man/bayou.makeMCMC.Rd
man/bayou-package.Rd
man/QG.sig2.Rd
man/cdpois.Rd
man/combine.chains.Rd
man/steppingstone.Rd
man/make.refFn.Rd
man/bayou-deprecated.Rd
man/plot.bayouMCMC.Rd
man/load.bayou.Rd
man/bayou.lik.Rd
man/pars2simmap.Rd
man/print.refFn.Rd
man/OUwie2bayou.Rd
man/phenogram.density.Rd
man/regime.plot.Rd
man/dsb.Rd
man/OU.lik.Rd
man/set.burnin.Rd
man/identifyBranches.Rd
man/simmap.W.Rd
man/shiftSummaries.Rd
man/bayou2OUwie.Rd
man/plotOUtreesim.Rd
man/dataSim.Rd
man/plotShiftSummaries.Rd
man/makeTransparent.Rd
man/plotBranchHeatMap.Rd
man/bayou.checkModel.Rd
man/plotRegimes.Rd
man/plotSimmap.mcmc.Rd
man/plot.ssMCMC.Rd
man/print.ssMCMC.Rd
man/priorSim.Rd
man/OU.repar.Rd
man/pull.pars.Rd
man/model.OU.Rd
man/print.bayouMCMC.Rd
man/dloc.Rd
