plot.ssMCMC: S3 method for plotting ssMCMC objects
In bayou: Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
Description
Usage
Arguments
Details
Description
S3 method for plotting ssMCMC objects
Usage
1
2
Arguments
x
An 'ssMCMC' object
...
Additional arguments passed to plot
Details
Produces 4 plots. The first 3 plot the prior, reference function and likelihood. Different colors
indicate different power posteriors for each. These chains should appear to be well mixed. The final plot
shows the sum of the marginal likelihood across each of the steps in the stepping stone algorithm.
bayou documentation built on May 2, 2019, 2:46 a.m.
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Description Usage Arguments Details
Description
S3 method for plotting ssMCMC objects
Usage
1 2 |
Arguments
x |
An 'ssMCMC' object |
... |
Additional arguments passed to |
Details
Produces 4 plots. The first 3 plot the prior, reference function and likelihood. Different colors indicate different power posteriors for each. These chains should appear to be well mixed. The final plot shows the sum of the marginal likelihood across each of the steps in the stepping stone algorithm.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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