beadarrayMSV: Analysis of Illumina BeadArray SNP data including MSV markers

Imports bead-summary data from Illumina scanner. Pre-processes using a suite of optional normalizations and transformations. Clusters and automatically calls genotypes, critically able to handle markers in duplicated regions of the genome (multisite variants; MSVs). Interactive clustering if needed. MSVs with variation in both paralogs may be resolved and mapped to their respective chromosomes. Quality control including pedigree checking and visual assessment of clusters. Too large data-sets are handled by working on smaller subsets of the data in sequence.

Package details

AuthorLars Gidskehaug
MaintainerLars Gidskehaug <>
LicenseGPL (>= 2)
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the beadarrayMSV package in your browser

Any scripts or data that you put into this service are public.

beadarrayMSV documentation built on May 1, 2019, 6:33 p.m.