API for beadarrayMSV
Analysis of Illumina BeadArray SNP data including MSV markers

Global functions
AlleleSetIllumina-class Man page
BSRed.193 Man page
BeadSetIllumina-class Man page
assignParalogues Man page Source code
assignToAlleleSet Man page Source code
beadarrayMSV Man page
beadarrayMSV-package Man page
callGenotypes Man page Source code
callGenotypes.interactive Man page Source code
callGenotypes.verboseTest Man page Source code
cart2pol Man page Source code
countFailedSNP Man page Source code
createAlleleSet Man page Source code
createAlleleSetFromFiles Man page Source code
createMultiSetFromFiles Man page Source code
findClusters Man page Source code
findPolyploidClusters Man page Source code
findSeTheta Man page Source code
generatePolyCenters Man page Source code
getCenters Man page Source code
getNoiseDistributions Man page Source code
getNormInd Man page Source code
getSingleCalls Man page Source code
getSpecificCenters Man page Source code
initialize,AlleleSetIllumina-method Man page
initialize,BeadSetIllumina-method Man page
locateParalogues Man page Source code
makeDiploidCalls Man page Source code
makeFilenames Man page Source code
manualCall Man page Source code
modifyExistingFilenames Man page Source code
normalizeIllumina Man page Source code
normalizeShearedChannels Man page Source code
plotCountsChrom Man page Source code
plotEstimatedNoise Man page Source code
plotGenotypes Man page Source code
plotPreprocessing Man page Source code
preprocessBeadSet Man page Source code
readBeadSummaryOutput Man page Source code
resolveInheritanceSNP Man page Source code
scatterArrays Man page Source code
setGenoOptions Man page Source code
setMergeOptions Man page Source code
setNormOptions Man page Source code
shearRawSignal Man page Source code
testHardyWeinberg Man page Source code
transformChannels Man page Source code
transformSEs Man page Source code
translateTheta Man page Source code
translateThetaCombined Man page Source code
translateThetaFromFiles Man page Source code
unmixParalogues Man page Source code
validateCallsPedigree Man page Source code
validateSingleCall Man page Source code
writeAlleleSet Man page Source code
beadarrayMSV documentation built on May 29, 2017, 9:07 a.m.