Description Usage Arguments Details Value Author(s) See Also Examples
Generates a list of all possible genotype categories for a specific ploidy, including the theoretic allele ratios
1 | generatePolyCenters(ploidy)
|
ploidy |
One of “di”, “tetra”, or “tetra.red”. The first allows only monomorphics and SNPs, the second allows PSVs and MSVs as well. The option “tetra.red” is the same as “tetra”, except “MSV-5” is not included. This may be used (especially for small samples) if many false positive MSV-5 markers are found, and a more restricted classification is needed |
Usually called by other functions
List including
centers |
List of possible B allele ratios for each cluster category |
classification |
List of possible cluster categories |
size |
Numeric vector with the maximum number of clusters within each category |
Lars Gidskehaug
callGenotypes
, getCenters
,
testHardyWeinberg
, plotGenotypes
1 2 3 | #For genotype calling of tetraploid genomes
polyCent <- generatePolyCenters(ploidy='tetra')
print(polyCent$classification)
|
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