generatePolyCenters: Generate list of possible genotype categories

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/beadarrayMSV.R

Description

Generates a list of all possible genotype categories for a specific ploidy, including the theoretic allele ratios

Usage

1

Arguments

ploidy

One of “di”, “tetra”, or “tetra.red”. The first allows only monomorphics and SNPs, the second allows PSVs and MSVs as well. The option “tetra.red” is the same as “tetra”, except “MSV-5” is not included. This may be used (especially for small samples) if many false positive MSV-5 markers are found, and a more restricted classification is needed

Details

Usually called by other functions

Value

List including

centers

List of possible B allele ratios for each cluster category

classification

List of possible cluster categories

size

Numeric vector with the maximum number of clusters within each category

Author(s)

Lars Gidskehaug

See Also

callGenotypes, getCenters, testHardyWeinberg, plotGenotypes

Examples

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#For genotype calling of tetraploid genomes
polyCent <- generatePolyCenters(ploidy='tetra')
print(polyCent$classification)

beadarrayMSV documentation built on May 29, 2017, 9:07 a.m.