API for beadarrayMSV
Analysis of Illumina BeadArray SNP data including MSV markers
| Global functions | |
|---|---|
| AlleleSetIllumina-class | Man page |
| BSRed.193 | Man page |
| BeadSetIllumina-class | Man page |
| assignParalogues | Man page Source code |
| assignToAlleleSet | Man page Source code |
| beadarrayMSV | Man page |
| beadarrayMSV-package | Man page |
| callGenotypes | Man page Source code |
| callGenotypes.interactive | Man page Source code |
| callGenotypes.verboseTest | Man page Source code |
| cart2pol | Man page Source code |
| countFailedSNP | Man page Source code |
| createAlleleSet | Man page Source code |
| createAlleleSetFromFiles | Man page Source code |
| createMultiSetFromFiles | Man page Source code |
| findClusters | Man page Source code |
| findPolyploidClusters | Man page Source code |
| findSeTheta | Man page Source code |
| generatePolyCenters | Man page Source code |
| getCenters | Man page Source code |
| getNoiseDistributions | Man page Source code |
| getNormInd | Man page Source code |
| getSingleCalls | Man page Source code |
| getSpecificCenters | Man page Source code |
| initialize,AlleleSetIllumina-method | Man page |
| initialize,BeadSetIllumina-method | Man page |
| locateParalogues | Man page Source code |
| makeDiploidCalls | Man page Source code |
| makeFilenames | Man page Source code |
| manualCall | Man page Source code |
| modifyExistingFilenames | Man page Source code |
| normalizeIllumina | Man page Source code |
| normalizeShearedChannels | Man page Source code |
| plotCountsChrom | Man page Source code |
| plotEstimatedNoise | Man page Source code |
| plotGenotypes | Man page Source code |
| plotPreprocessing | Man page Source code |
| preprocessBeadSet | Man page Source code |
| readBeadSummaryOutput | Man page Source code |
| resolveInheritanceSNP | Man page Source code |
| scatterArrays | Man page Source code |
| setGenoOptions | Man page Source code |
| setMergeOptions | Man page Source code |
| setNormOptions | Man page Source code |
| shearRawSignal | Man page Source code |
| testHardyWeinberg | Man page Source code |
| transformChannels | Man page Source code |
| transformSEs | Man page Source code |
| translateTheta | Man page Source code |
| translateThetaCombined | Man page Source code |
| translateThetaFromFiles | Man page Source code |
| unmixParalogues | Man page Source code |
| validateCallsPedigree | Man page Source code |
| validateSingleCall | Man page Source code |
| writeAlleleSet | Man page Source code |
