ineffactorOR2: Inefficiency factor in the OR2 model

In bqror: Bayesian Quantile Regression for Ordinal Models

Inefficiency factor in the OR2 model

Description

This function calculates the inefficiency factor from the MCMC draws of (\beta, \sigma) in the OR2 model (ordinal quantile model with exactly 3 outcomes). The inefficiency factor is calculated using the batch-means method.

Usage

ineffactorOR2(x, betadraws, sigmadraws, accutoff, verbose)

Arguments

x	covariate matrix of size (n x k) including a column of ones with or without column names. This input is used to extract column names, if available, but not used in calculation.
betadraws	dataframe of the Gibbs draws of \beta, size (k x nsim).
sigmadraws	dataframe of the Gibbs draws of \sigma, size (1 x nsim).
accutoff	cut-off to identify the number of lags and form batches, default is 0.05.
verbose	whether to print the final output and provide additional information or not, default is TRUE.

Details

Calculates the inefficiency factor of (\beta, \sigma) using the batch-means method based on the Gibbs draws. Inefficiency factor can be interpreted as the cost of working with correlated draws. A low inefficiency factor indicates better mixing and an efficient algorithm.

Value

Returns a column vector of inefficiency factors for each component of \beta and \sigma.

References

Greenberg, E. (2012). “Introduction to Bayesian Econometrics.” Cambridge University Press, Cambridge. DOI: 10.1017/CBO9780511808920

Chib, S. (2012), "Introduction to simulation and MCMC methods." In Geweke J., Koop G., and Dijk, H.V., editors, "The Oxford Handbook of Bayesian Econometrics", pages 183–218. Oxford University Press, Oxford. DOI: 10.1093/oxfordhb/9780199559084.013.0006

See Also

pracma, acf

Examples

set.seed(101)
data("data25j3")
y <- data25j3$y
xMat <- data25j3$x
k <- dim(xMat)[2]
b0 <- array(rep(0, k), dim = c(k, 1))
B0 <- 10*diag(k)
n0 <- 5
d0 <- 8
output <- quantregOR2(y = y, x = xMat, b0, B0, n0, d0, gammacp2 = 3,
burn = 10, mcmc = 40, p = 0.25, accutoff = 0.5, verbose = FALSE)
betadraws <- output$betadraws
sigmadraws <- output$sigmadraws

inefficiency <- ineffactorOR2(xMat, betadraws, sigmadraws, 0.5, TRUE)

# Summary of Inefficiency Factor:
#            Inef Factor
# beta_1       1.5686
# beta_2       1.5240
# beta_3       1.4807
# sigma        2.4228

bqror documentation built on May 31, 2023, 5:19 p.m.