cRegulome: Obtain and Visualize Regulome-Gene Expression Correlations in Cancer

Builds a 'SQLite' database file of pre-calculated transcription factor/microRNA-gene correlations (co-expression) in cancer from the Cistrome Cancer Liu et al. (2011) <doi:10.1186/gb-2011-12-8-r83> and 'miRCancerdb' databases (in press). Provides custom classes and functions to query, tidy and plot the correlation data.

Package details

AuthorMahmoud Ahmed [aut, cre]
MaintainerMahmoud Ahmed <[email protected]>
LicenseGPL-3
Version0.2.0
URL https://github.com/ropensci/cRegulome
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("cRegulome")

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cRegulome documentation built on Sept. 21, 2018, 6:29 p.m.