cor_igraph: Make an igraph object

In cRegulome: Obtain and Visualize Regulome-Gene Expression Correlations in Cancer

Description

An igraph object of from cmicroRNA or cTF objects.

Usage

cor_igraph(ob, directed = FALSE)

Arguments

ob	A cmicroRNA or cTF object such as this returned by calling cmicroRNA or cTF.
directed	A logical when FALSE the graph is indirected

Value

An igraph object

Examples

# load required libraries
library(RSQLite)
library(cRegulome)

# locate the testset file and connect
fl <- system.file('extdata', 'cRegulome.db', package = 'cRegulome')
conn <- dbConnect(SQLite(), fl)

# enter a custom query with different arguments
dat <- get_mir(conn,
               mir = c('hsa-let-7g', 'hsa-let-7i'),
               study = 'STES')

# make a cmicroRNA object   
cmir <- cmicroRNA(dat)

# print object
cor_igraph(cmir)

cRegulome documentation built on July 1, 2020, 10:26 p.m.