Description Usage Arguments Value Examples
View source: R/methods.plots.R
A dot plot of microRNA/TF correlation in a single study of TCGA. When the
object cmicroRNA/cTF contains more than one TCGA studies, the
argument study
is a requirement.
1 |
ob |
A cmicroRNA or cTF object such as this returned by calling cmicroRNA or cTF. |
study |
A |
... |
Other options |
A ggplot
object of a dot plot of the correlation values
between genes and microRNAs or transcription factors in a TCGA study.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | # locate the testset file and connect
fl <- system.file('extdata', 'cRegulome.db', package = 'cRegulome')
conn <- RSQLite::dbConnect(RSQLite::SQLite(), fl)
# enter a custom query with different arguments
dat <- get_mir(conn,
mir = 'hsa-let-7g',
study = 'STES',
min_abs_cor = .3,
max_num = 5)
# make a cmicroRNA object
cmir <- cmicroRNA(dat)
# print object
cor_plot(cmir)
|
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