stat_make: Make A SQL statement

In cRegulome: Obtain and Visualize Regulome-Gene Expression Correlations in Cancer

Description

Not meant to be called directly by the user.

Usage

stat_make(reg, study, min_abs_cor, max_num, targets, type = "mir")

Arguments

reg	A character vector of one or more regulator ID.
study	A character vector of The Cancer Genome Atlas (TCGA) study identifiers. To view the available studies in TCGA project, https://tcga-data.nci.nih.gov/docs/publications/tcga. When left to default NULL all available studies will be included.
min_abs_cor	A numeric, an absolute correlation minimum between 0 and 1 for each mir.
max_num	An integer, maximum number of features to show for each mir in each study.
targets	A character vector of gene symbol names.
type	A character string. Either 'mir' of 'tf'. Used to define columns and tables names.

Value

A character string

Examples

stat_make(reg = 'hsa-let-7g',
          study = 'STES')
          
stat_make(reg = 'hsa-let-7g',
          study = 'STES',
          min_abs_cor = .3)
          
stat_make(reg = 'hsa-let-7g',
          study = 'STES',
          min_abs_cor = .3,
          max_num = 5)
          

cRegulome documentation built on July 1, 2020, 10:26 p.m.