API for cellGeometry
Geometric Single Cell Deconvolution

Global functions
add_noise	Man page Source code
adjScaleGeneMatrix	Source code
adjust_library_size	Man page Source code
approxfun.matrix	Source code
balance_cores	Source code
best_nsubclass	Source code
bulk2sc	Source code
bulk_stats	Source code
cat_timer	Source code
cellMarkers	Man page Source code
check_bulk	Source code
collapse_group	Man page Source code
cols2mats	Source code
comp_check	Source code
comp_heatmap	Man page Source code
comp_metric	Source code
compmat_percent	Source code
confint.deconv	Man page Source code
convertsymbol	Source code
cooks.distance.deconv	Man page Source code
cooks_distance_fit	Source code
cos_sim	Source code
cos_similarity	Man page Source code
cv_deconv	Source code
deconv	Source code
deconv_adjust	Source code
deconv_adjust_core	Source code
deconv_lambda_set	Source code
deconv_multipass	Source code
deconvolute	Man page Source code
diagnose	Man page Source code
dotprod	Source code
equalweight	Source code
finish	Source code
fix_bulk	Man page Source code
fix_group	Man page Source code
fixzero	Source code
gene2symbol	Man page Source code
gene_angle	Man page Source code
generate_samples	Man page Source code
get_cellmat	Source code
ggplot_residuals	Man page Source code
graded_log_noise	Man page Source code
hat	Source code
hat_fit	Source code
info	Source code
kappa.deconv	Man page Source code
linear_qq	Source code
log2s	Man page Source code
log_noise	Man page Source code
logmean	Man page Source code
material_colours	Source code
max_abs	Source code
max_similarity	Man page Source code
max_spill	Source code
mem_estimate	Source code
mergeMarkers	Man page Source code
metric_set	Man page
outlier_metric	Source code
plot.qqmap	Man page Source code
plot_biasvar	Man page Source code
plot_comp	Man page Source code
plot_cv	Man page Source code
plot_path	Man page Source code
plot_pred	Man page
plot_residuals	Man page Source code
plot_set	Man page Source code
plot_tune	Man page Source code
quantile_map	Man page Source code
quick_deconv	Source code
rank_angle	Man page Source code
reduceNoise	Man page Source code
rem_names	Source code
residuals.deconv	Man page Source code
residuals_deconv	Source code
rstandard.deconv	Man page Source code
rstudent.deconv	Man page Source code
rstudent_fit	Source code
sc2bulk	Source code
scaleSphere	Source code
scapply	Man page Source code
scmean	Man page Source code
scmean2	Source code
scmeanCore	Source code
scmeanCore2	Source code
se	Man page Source code
shift_noise	Man page Source code
signature_heatmap	Man page Source code
simulate_bulk	Man page Source code
slapply	Man page Source code
sliceIndex	Source code
specificity_plot	Man page Source code
specificity_plotly	Man page Source code
spillover_heatmap	Man page Source code
sqrt_noise	Man page Source code
stack_ggplot	Man page Source code
stack_plot	Man page Source code
summary.cellMarkers	Source code
summary.tune_deconv	Man page Source code
timer	Source code
trimmean	Man page Source code
tune_dec	Source code
tune_deconv	Man page Source code
tune_stats	Source code
updateMarkers	Man page Source code
violin_plot	Man page Source code