violin_plot: Cell subclass violin plot
In cellGeometry: Geometric Single Cell Deconvolution
violin_plot R Documentation
Cell subclass violin plot
Description
Produces violin plots using ggplot2 showing amounts of cell subclasses in
deconvoluted bulk samples.
Usage
violin_plot(x, percent = FALSE, order_cols = c("none", "increase", "decrease"))
Arguments
x
matrix of deconvolution results with samples in rows and cell
subclasses or groups in columns. If a 'deconv' class object is supplied the
deconvolution values for the cell subclasses are extracted and plotted.
percent
Logical whether to scale the matrix rows as percentage.
order_cols
Character value specifying with cell types are ordered by
mean abundance.
Value
A ggplot2 plotting object.
cellGeometry documentation built on April 20, 2026, 1:06 a.m.
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| violin_plot | R Documentation |
Cell subclass violin plot
Description
Produces violin plots using ggplot2 showing amounts of cell subclasses in deconvoluted bulk samples.
Usage
violin_plot(x, percent = FALSE, order_cols = c("none", "increase", "decrease"))
Arguments
x |
matrix of deconvolution results with samples in rows and cell subclasses or groups in columns. If a 'deconv' class object is supplied the deconvolution values for the cell subclasses are extracted and plotted. |
percent |
Logical whether to scale the matrix rows as percentage. |
order_cols |
Character value specifying with cell types are ordered by mean abundance. |
Value
A ggplot2 plotting object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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