comp_heatmap: Compensation heatmap

In cellGeometry: Geometric Single Cell Deconvolution

Compensation heatmap

Description

Plots a heatmap of the compensation matrix for cell subclasses using ComplexHeatmap.

Usage

comp_heatmap(
  x,
  cell_table = NULL,
  text = NULL,
  cutoff = 0.2,
  fontsize = 8,
  subset = NULL,
  ...
)

Arguments

x	object of class 'deconv' or a matrix of compensation values.
cell_table	optional grouping vector to separate the heatmap rows and columns into groups.
text	Logical whether to show values whose absolute value > cutoff. By default only shown for smaller matrices.
cutoff	Absolute threshold for showing values.
fontsize	Numeric value for font size for cell values when text = TRUE.
subset	Character vector of groups to be subsetted.
...	optional arguments passed to ComplexHeatmap::Heatmap()

Value

No return value. Draws a ComplexHeatmap.

cellGeometry documentation built on April 20, 2026, 1:06 a.m.