chromoR: Analysis of chromosomal interactions data (correction, segmentation and comparison)

chromoR provides users with a statistical pipeline for analysing chromosomal interactions data (Hi-C data).It combines wavelet methods and a Bayesian approach for correction (bias and noise) and comparison (detecting significant changes between Hi-C maps) of Hi-C contact maps.In addition, it also support detection of change points in 1D Hi-C contact profiles.

Install the latest version of this package by entering the following in R:
install.packages("chromoR")
AuthorYoli Shavit
Date of publication2014-02-11 17:34:44
MaintainerYoli Shavit <ys388@cam.ac.uk>
LicenseGPL
Version1.0

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Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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