chromoR provides users with a statistical pipeline for analysing chromosomal interactions data (Hi-C data).It combines wavelet methods and a Bayesian approach for correction (bias and noise) and comparison (detecting significant changes between Hi-C maps) of Hi-C contact maps.In addition, it also support detection of change points in 1D Hi-C contact profiles.
|Date of publication||2014-02-11 17:34:44|
|Maintainer||Yoli Shavit <firstname.lastname@example.org>|
buildCIM: Builds Chromosomal Interactions Maps
chromoR-package: Analysis of chromosomal interactions data (Hi-C data)
compareCIM: Compares 2 CIMs
correctCIM: Corrects a chromosomal interactions map (CIM)
correctPairCIM: Corrects a pairwise CIM
imr90.1: A corrected CIM of replicate 1 of IMR90, for chromosomes 1...
imr90.1.obs: A non-corrected CIM of replicate 1 of IMR90, for chromosomes...
imr90.2: A CIM of replicate 2 of IMR90, for chromosomes 1 and 2
seg: A segmentation for imr90.1 and imr90.2 CIMs
seg.imr90.obs: A segmentation for imr90.1.obs CIM
segmentCIM: Segments a 1D contact profile (1D CIM)