chromoR: Analysis of chromosomal interactions data (correction, segmentation and comparison)

chromoR provides users with a statistical pipeline for analysing chromosomal interactions data (Hi-C data).It combines wavelet methods and a Bayesian approach for correction (bias and noise) and comparison (detecting significant changes between Hi-C maps) of Hi-C contact maps.In addition, it also support detection of change points in 1D Hi-C contact profiles.

AuthorYoli Shavit
Date of publication2014-02-11 17:34:44
MaintainerYoli Shavit <ys388@cam.ac.uk>
LicenseGPL
Version1.0

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Files in this package

chromoR
chromoR/exec
chromoR/exec/parse_hic_to_matrix.py
chromoR/NAMESPACE
chromoR/data
chromoR/data/imr90.1.rda
chromoR/data/imr90.2.rda
chromoR/data/seg.imr90.obs.rda
chromoR/data/seg.rda
chromoR/data/datalist
chromoR/data/imr90.1.obs.rda
chromoR/R
chromoR/R/HicDetect.R chromoR/R/WaveletChangePoint.R chromoR/R/buildContactMatrices.R chromoR/R/VarianceStabCorrection.R
chromoR/MD5
chromoR/DESCRIPTION
chromoR/man
chromoR/man/buildCIM.Rd chromoR/man/chromoR-package.Rd chromoR/man/compareCIM.Rd chromoR/man/imr90.1.Rd chromoR/man/imr90.1.obs.Rd chromoR/man/seg.Rd chromoR/man/correctCIM.Rd chromoR/man/imr90.2.Rd chromoR/man/seg.imr90.obs.Rd chromoR/man/segmentCIM.Rd chromoR/man/correctPairCIM.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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