imr90.1: A corrected CIM of replicate 1 of IMR90, for chromosomes 1...

Description Usage Format References Examples

Description

A corrected chromosomal interaction map (CIM) for replicate 1 of IMR90, for chromosomes 1 and 2, generated from a publicly available Hi-C data set [1]. This matrix was built with BuildCIM given Hi-C mapped positions (publicly available from

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156) and then further corrected with CorrectCIM.

Usage

1

Format

A matrix

References

[1] J. R. Dixon, S. Selvaraj, F. Yue, A. Kim, Y. Li, Y. Shen, M. Hu, J. S. Liu and B. Ren, Nature, 2012, 485, 376.

See also http://www.cl.cam.ac.uk/~ys388/chromoR/ for the genome wide CIM.

Examples

1

chromoR documentation built on May 30, 2017, 5:08 a.m.