Description Usage Format References Examples
A non corrected chromosomal interaction map (CIM) for replicate 1 of IMR90, for chromosomes 1 and 2, generated from a publicly available Hi-C data set [1]. This matrix was build with BuildCIM given Hi-C mapped positions, publicly available
from http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156
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A matrix
[1] J. R. Dixon, S. Selvaraj, F. Yue, A. Kim, Y. Li, Y. Shen, M. Hu, J. S. Liu and B. Ren, Nature, 2012, 485, 376.
See also http://www.cl.cam.ac.uk/~ys388/chromoR/ for the genome wide CIM.
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Loading required package: haarfisz
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Loading required package: MASS
WaveThresh: R wavelet software, release 4.6.8, installed
Copyright Guy Nason and others 1993-2016
Note: nlevels has been renamed to nlevelsWT
Loading required package: gdata
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gdata: Unable to locate valid perl interpreter
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gdata: read.xls() will be unable to read Excel XLS and XLSX files
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gdata:
gdata: (To avoid display of this message in the future, please ensure
gdata: perl is installed and available on the executable search path.)
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gdata: Unable to load perl libaries needed by read.xls()
gdata: to support 'XLX' (Excel 97-2004) files.
gdata: Unable to load perl libaries needed by read.xls()
gdata: to support 'XLSX' (Excel 2007+) files.
gdata: Run the function 'installXLSXsupport()'
gdata: to automatically download and install the perl
gdata: libaries needed to support Excel XLS and XLSX formats.
Attaching package: 'gdata'
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