circlize: Circular Visualization

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Circular layout is an efficient way for the visualization of huge amounts of information. Here the circlize package provides an implementation of circular layout generation in R as well as an enhancement of available software. The flexibility of this package is based on the usage of low-level graphics functions such that self-defined high-level graphics can be easily implemented by users for specific purposes. Together with the seamless connection between the powerful computational and visual environment in R, circlize gives users more convenience and freedom to design figures for better understanding complex patterns behind multi-dimensional data.

Author
Zuguang Gu
Date of publication
2016-09-26 23:38:12
Maintainer
Zuguang Gu <z.gu@dkfz.de>
License
GPL (>= 2)
Version
0.3.9
URLs

View on CRAN

Files in this package

circlize
circlize/inst
circlize/inst/CITATION
circlize/inst/extdata
circlize/inst/extdata/tp_family.RData
circlize/inst/extdata/cytoBand.txt
circlize/inst/extdata/chromInfo.txt
circlize/inst/extdata/DMR.RData
circlize/inst/extdata/bird.orders.RData
circlize/inst/doc
circlize/inst/doc/circlize.Rnw
circlize/inst/doc/genomic_plot.R
circlize/inst/doc/interesting_graphics.R
circlize/inst/doc/circular_phylogenetic_tree.Rnw
circlize/inst/doc/circlize.R
circlize/inst/doc/interesting_graphics.Rnw
circlize/inst/doc/visualize_relations_by_chord_diagram.pdf
circlize/inst/doc/visualize_relations_by_chord_diagram.R
circlize/inst/doc/circular_phylogenetic_tree.R
circlize/inst/doc/visualize_relations_by_chord_diagram.Rnw
circlize/inst/doc/interesting_graphics.pdf
circlize/inst/doc/circular_phylogenetic_tree.pdf
circlize/inst/doc/circular_visualization_of_matrix.pdf
circlize/inst/doc/circular_visualization_of_matrix.Rnw
circlize/inst/doc/genomic_plot.Rnw
circlize/inst/doc/circlize.pdf
circlize/inst/doc/genomic_plot.pdf
circlize/NAMESPACE
circlize/demo
circlize/demo/foo.R
circlize/demo/00Index
circlize/NEWS
circlize/R
circlize/R/overview.R
circlize/R/utils.R
circlize/R/plot.R
circlize/R/copy_IRanges.R
circlize/R/chordDiagram.R
circlize/R/link.R
circlize/R/genomic_utils.R
circlize/R/genomic.R
circlize/R/global.R
circlize/R/zzz.R
circlize/vignettes
circlize/vignettes/circlize.Rnw
circlize/vignettes/figures
circlize/vignettes/figures/doodle.jpeg
circlize/vignettes/figures/genomic_initialize_ideogram-1.pdf
circlize/vignettes/circular_phylogenetic_tree.Rnw
circlize/vignettes/src
circlize/vignettes/src/intro-09-text-niceFacing.R
circlize/vignettes/src/intro-11-axis.R
circlize/vignettes/src/intro-21-diffradius.R
circlize/vignettes/src/intro-08-lines.R
circlize/vignettes/src/intro-14-hist.R
circlize/vignettes/src/intro-09-text.R
circlize/vignettes/src/intro-00-correspondence.R
circlize/vignettes/src/intro-15-heatmap.R
circlize/vignettes/src/intro-12-link.R
circlize/vignettes/src/intro-18-part2.R
circlize/vignettes/src/intro-05-factor.R
circlize/vignettes/src/intro-02-order.R
circlize/vignettes/src/intro-05-sectorwidth.R
circlize/vignettes/src/intro-03-transformation.R
circlize/vignettes/src/genomic-07-posTransformLinesText.R
circlize/vignettes/src/intro-23-layout.R
circlize/vignettes/src/intro-08-linescurve.R
circlize/vignettes/src/intro-19-nested.R
circlize/vignettes/src/intro-07-direction.R
circlize/vignettes/src/intro-04-coordinate.R
circlize/vignettes/src/intro-10-smooth.R
circlize/vignettes/src/intro-22-outside.R
circlize/vignettes/src/intro-20-seperated.R
circlize/vignettes/src/intro-17-part.R
circlize/vignettes/src/intro-06-region.R
circlize/vignettes/interesting_graphics.Rnw
circlize/vignettes/visualize_relations_by_chord_diagram.Rnw
circlize/vignettes/circular_visualization_of_matrix.Rnw
circlize/vignettes/genomic_plot.Rnw
circlize/MD5
circlize/build
circlize/build/vignette.rds
circlize/DESCRIPTION
circlize/man
circlize/man/circos.text.rd
circlize/man/circos.genomicDensity.rd
circlize/man/circos.genomicRainfall.rd
circlize/man/circos.trackLines.rd
circlize/man/circos.genomicPoints.rd
circlize/man/circos.trackText.rd
circlize/man/getI.rd
circlize/man/circlize-package.rd
circlize/man/circos.par.rd
circlize/man/show.index.rd
circlize/man/circlize.rd
circlize/man/circos.axis.rd
circlize/man/posTransform.text.rd
circlize/man/circos.trackPoints.rd
circlize/man/adjacencyList2Matrix.rd
circlize/man/smartAlign.rd
circlize/man/read.chromInfo.rd
circlize/man/circos.clear.rd
circlize/man/genomicDensity.rd
circlize/man/circos.genomicLink.rd
circlize/man/circos.initialize.rd
circlize/man/draw.sector.rd
circlize/man/cytoband.col.rd
circlize/man/circos.dendrogram.rd
circlize/man/circos.points.rd
circlize/man/reverse.circlize.rd
circlize/man/posTransform.default.rd
circlize/man/circos.genomicTrackPlotRegion.rd
circlize/man/colorRamp2.rd
circlize/man/circos.genomicLines.rd
circlize/man/circos.genomicRect.rd
circlize/man/circos.updatePlotRegion.rd
circlize/man/circos.info.rd
circlize/man/circos.polygon.rd
circlize/man/get.all.track.index.rd
circlize/man/read.cytoband.rd
circlize/man/circos.xaxis.rd
circlize/man/highlight.sector.rd
circlize/man/circos.genomicInitialize.rd
circlize/man/circos.rect.rd
circlize/man/circos.genomicText.rd
circlize/man/chordDiagramFromDataFrame.rd
circlize/man/degree.rd
circlize/man/highlight.chromosome.rd
circlize/man/circos.genomicTrack.rd
circlize/man/circos.initializeWithIdeogram.rd
circlize/man/circos.lines.rd
circlize/man/get.all.sector.index.rd
circlize/man/col2value.rd
circlize/man/rand_color.rd
circlize/man/rainfallTransform.rd
circlize/man/get.cell.meta.data.rd
circlize/man/get.current.chromosome.rd
circlize/man/circos.update.rd
circlize/man/circos.link.rd
circlize/man/circos.trackHist.rd
circlize/man/circos.trackPlotRegion.rd
circlize/man/circos.track.rd
circlize/man/chordDiagram.rd
circlize/man/circos.genomicPosTransformLines.rd
circlize/man/circos.segments.rd
circlize/man/circos.yaxis.rd
circlize/man/chordDiagramFromMatrix.rd
circlize/man/generateRandomBed.rd