API for circlize
Circular Visualization

Global functions
$.CELL_META Man page
CELL_META Man page
add_transparency Man page Source code
adjacencyList2Matrix Man page Source code
arc.midpoint Source code
arc.points Source code
are.lines.intersected Source code
as.degree Source code
as.radian Source code
check.points.position Source code
check.track.position Source code
chordDiagram Man page Source code
chordDiagramFromDataFrame Man page Source code
chordDiagramFromMatrix Man page Source code
circlize Man page Source code
circlize-package Man page
circos.approx Source code
circos.arrow Man page Source code
circos.axis Man page Source code
circos.clear Man page Source code
circos.createPlotRegion Source code
circos.dendrogram Man page Source code
circos.genomicDensity Man page Source code
circos.genomicHeatmap Man page Source code
circos.genomicIdeogram Man page Source code
circos.genomicInitialize Man page Source code
circos.genomicLabels Man page Source code
circos.genomicLines Man page Source code
circos.genomicLink Man page Source code
circos.genomicPoints Man page Source code
circos.genomicPosTransformLines Man page Source code
circos.genomicRainfall Man page Source code
circos.genomicRect Man page Source code
circos.genomicText Man page Source code
circos.genomicTrack Man page Source code
circos.genomicTrackPlotRegion Man page Source code
circos.info Man page Source code
circos.initialize Man page Source code
circos.initializeWithIdeogram Man page Source code
circos.lines Man page Source code
circos.link Man page Source code
circos.nested Man page Source code
circos.par Man page Source code
circos.points Man page Source code
circos.polygon Man page Source code
circos.raster Man page Source code
circos.rect Man page Source code
circos.segments Man page Source code
circos.text Man page Source code
circos.track Man page Source code
circos.trackHist Man page Source code
circos.trackLines Man page Source code
circos.trackPlotRegion Man page Source code
circos.trackPoints Man page Source code
circos.trackText Man page Source code
circos.update Man page Source code
circos.updatePlotRegion Man page Source code
circos.xaxis Man page Source code
circos.yaxis Man page Source code
col2value Man page Source code
colorRamp2 Man page Source code
continuousIndexSegment Source code
convert_height Man page Source code
convert_length Man page Source code
convert_unit_in_data_coordinate Source code
convert_x Man page Source code
convert_y Man page Source code
cytoband.col Man page Source code
default.major.by Source code
defineColor Source code
degree Man page Source code
degreeDiff Source code
degreeDiff2 Source code
dev.off2 Source code
draw.sector Man page Source code
fontsize Man page Source code
generateRandomBed Man page Source code
genomicDensity Man page Source code
get.all.sector.index Man page Source code
get.all.track.index Man page Source code
get.cell.data Source code
get.cell.meta.data Man page Source code
get.current.chromosome Man page Source code
get.current.sector.index Man page Source code
get.current.track.index Man page Source code
get.sector.data Source code
getColorInfo Source code
getHueRange Source code
getI Man page Source code
getMinimumBrightness Source code
getQuadraticPoints Source code
getSaturationRange Source code
get_color Source code
get_most_inside_radius Source code
has.cell Source code
highlight.chromosome Man page Source code
highlight.sector Man page Source code
is.circos.initialized Source code
is.dataFrameList Source code
line_degree Source code
lines.expand Source code
linesWithArrows Source code
loadColorBounds Source code
mat2df Source code
message_wrap Source code
names.CELL_META Source code
normalizeChordDiagramGap Source code
normalizeGraphicalParam Source code
normalizeToDataFrame Source code
normalize_to_mat Source code
onAttach Source code
order_region Source code
overlap_interval Source code
overlap_region Source code
parsePreAllocateTracksValue Source code
parse_unit Source code
pickBrightness Source code
pickHue Source code
pickSaturation Source code
polar2Cartesian Source code
posTransform.default Man page Source code
posTransform.text Man page Source code
print.CELL_META Man page Source code
psubset Source code
quadratic.bezier Source code
quadratic.bezier.length Source code
rainfallTransform Man page Source code
rand_color Man page Source code
randomWithin Source code
read.chromInfo Man page Source code
read.cytoband Man page Source code
recycle.with.factors Source code
recycle.with.levels Source code
reduce_region Source code
resetGlobalVariable Source code
resize_image Source code
restrict_in Source code
revMat Source code
reverse.circlize Man page Source code
set.cell.data Source code
set.current.cell Man page Source code
set.current.sector.index Source code
set.current.track.index Source code
show.index Man page Source code
smartAlign Man page Source code
sort_chr Source code
sort_region Source code
stop_wrap Source code
strwrap2 Source code
uh Man page Source code
ux Man page Source code
uy Man page Source code
warning_wrap Source code
circlize documentation built on Nov. 19, 2017, 1:02 a.m.