circos.genomicIdeogram: Add an ideogram track

In circlize: Circular Visualization

Add an ideogram track

Description

Add an ideogram track

Usage

circos.genomicIdeogram(
    cytoband = system.file(package = "circlize", "extdata", "cytoBand.txt"),
    species = NULL,
    track.height = mm_h(2),
    track.margin = circos.par("track.margin"))

Arguments

cytoband	A data frame or a file path, pass to read.cytoband.
species	Abbreviations of the genome, pass to read.cytoband.
track.height	Height of the ideogram track.
track.margin	Margins for the track.

Author(s)

Zuguang Gu <[e-mail]>

See Also

https://jokergoo.github.io/circlize_book/book/high-level-genomic-functions.html#ideograms

Examples

circos.initializeWithIdeogram(plotType = c("labels", "axis"))
circos.track(ylim = c(0, 1))
circos.genomicIdeogram() # put ideogram as the third track

circlize documentation built on May 29, 2024, 1:59 a.m.