circos.genomicIdeogram: Add an ideogram track

Description Usage Arguments Author(s) See Also Examples

View source: R/genomic.R

Description

Add an ideogram track

Usage

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circos.genomicIdeogram(
    cytoband = system.file(package = "circlize", "extdata", "cytoBand.txt"),
    species = NULL,
    track.height = mm_h(2),
    track.margin = circos.par("track.margin"))

Arguments

cytoband

A data frame or a file path, pass to read.cytoband.

species

Abbreviations of the genome, pass to read.cytoband.

track.height

Height of the ideogram track.

track.margin

Margins for the track.

Author(s)

Zuguang Gu <z.gu@dkfz.de>

See Also

https://jokergoo.github.io/circlize_book/book/high-level-genomic-functions.html#ideograms

Examples

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circos.initializeWithIdeogram(plotType = c("labels", "axis"))
circos.track(ylim = c(0, 1))
circos.genomicIdeogram() # put ideogram as the third track

circlize documentation built on June 10, 2021, 1:06 a.m.